Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06465

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,241,852	+	truD	LU632_RS06460	0.57	-0.1
1,241,857	-	truD	LU632_RS06460	0.58	-0.1
1,241,998	-	truD	LU632_RS06460	0.71	-1.8
1,241,998	-	truD	LU632_RS06460	0.71	-0.8
1,241,998	-	truD	LU632_RS06460	0.71	+2.7
1,242,159	-	truD	LU632_RS06460	0.86	+0.4
1,242,159	-	truD	LU632_RS06460	0.86	+1.1
1,242,249	-				-0.6
1,242,263	+				+0.2
1,242,360	+				-0.9
1,242,418	+				+0.7
1,242,418	+				-1.1
1,242,418	+				+0.5
1,242,419	-				-2.5
1,242,419	-				-2.0
1,242,459	-				-0.2
1,242,546	+				+1.6
1,242,585	+				+3.5
1,242,586	-				-0.1
1,242,644	+				-0.1
1,242,705	+				-0.7
1,242,716	-				+0.5
1,242,779	+				+0.2
1,242,779	+				-0.1
1,242,779	+				+1.6
1,242,780	-				-0.3
1,242,862	+				-0.2
1,243,063	+	surE	LU632_RS06465	0.30	-0.1
1,243,185	+	surE	LU632_RS06465	0.46	+0.5
1,243,414	+	surE	LU632_RS06465	0.76	+0.2
1,243,592	+				+1.3
1,243,771	+		LU632_RS06470	0.29	-1.3
1,243,771	+		LU632_RS06470	0.29	-1.3
1,243,771	+		LU632_RS06470	0.29	-0.5
1,243,772	-		LU632_RS06470	0.29	-0.3
1,243,773	+		LU632_RS06470	0.30	-0.1
1,243,773	+		LU632_RS06470	0.30	-1.1
1,243,773	+		LU632_RS06470	0.30	-0.3
1,244,011	+		LU632_RS06470	0.67	+1.5
1,244,062	-		LU632_RS06470	0.76	+3.1
1,244,231	+				-0.5
1,244,231	+				+1.5
1,244,279	+				+1.4
1,244,335	+				+0.6
1,244,386	+				-0.5