Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06225

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,191,714	+	amiC	LU632_RS06215	0.50	-0.4
1,191,715	-	amiC	LU632_RS06215	0.50	-0.8
1,191,715	-	amiC	LU632_RS06215	0.50	-0.1
1,191,715	-	amiC	LU632_RS06215	0.50	+0.1
1,191,715	-	amiC	LU632_RS06215	0.50	-0.5
1,191,819	-	amiC	LU632_RS06215	0.59	+0.4
1,191,819	-	amiC	LU632_RS06215	0.59	+1.1
1,191,819	-	amiC	LU632_RS06215	0.59	-0.4
1,191,876	+	amiC	LU632_RS06215	0.64	+1.1
1,191,882	+	amiC	LU632_RS06215	0.64	-0.3
1,191,900	+	amiC	LU632_RS06215	0.66	+1.4
1,191,974	-	amiC	LU632_RS06215	0.72	+0.1
1,192,003	-	amiC	LU632_RS06215	0.74	+0.1
1,192,037	-	amiC	LU632_RS06215	0.77	-2.5
1,192,047	+	amiC	LU632_RS06215	0.77	+0.2
1,192,047	+	amiC	LU632_RS06215	0.77	+1.5
1,192,060	-	amiC	LU632_RS06215	0.79	+0.4
1,192,078	-	amiC	LU632_RS06215	0.80	-1.8
1,192,078	-	amiC	LU632_RS06215	0.80	-0.2
1,192,115	+	amiC	LU632_RS06215	0.83	-0.2
1,192,115	+	amiC	LU632_RS06215	0.83	-0.4
1,192,115	+	amiC	LU632_RS06215	0.83	-2.2
1,192,116	-	amiC	LU632_RS06215	0.83	-0.8
1,192,116	-	amiC	LU632_RS06215	0.83	+0.4
1,192,119	+	amiC	LU632_RS06215	0.83	+1.5
1,192,119	+	amiC	LU632_RS06215	0.83	-0.3
1,192,120	-	amiC	LU632_RS06215	0.83	+1.5
1,192,120	-	amiC	LU632_RS06215	0.83	+2.3
1,192,120	-	amiC	LU632_RS06215	0.83	-1.1
1,192,120	-	amiC	LU632_RS06215	0.83	-1.1
1,192,192	-	amiC	LU632_RS06215	0.89	-0.1
1,192,221	+				+0.7
1,192,221	+				-0.4
1,192,245	+				-1.6
1,192,245	+				-0.1
1,192,246	-				-0.2
1,192,246	-				+1.0
1,192,246	-				-0.5
1,192,301	+				+0.2
1,192,342	-				+0.6
1,192,342	-				-2.4
1,192,345	+				+0.9
1,192,346	-				+0.9
1,192,346	-				+1.5
1,192,347	+				-0.5
1,192,449	+		LU632_RS06220	0.51	-0.5
1,192,449	+		LU632_RS06220	0.51	+1.3
1,192,502	+				+1.1
1,192,503	-				+0.8
1,192,587	+				-0.5
1,192,588	-				+1.2
1,192,588	-				-1.3
1,192,653	-				+0.6
1,192,736	-				+3.7
1,192,785	-				-0.4
1,192,786	+				-0.2
1,192,787	-				+0.6
1,192,906	+	mltA	LU632_RS06225	0.19	+0.5
1,192,907	-	mltA	LU632_RS06225	0.19	-0.8
1,192,927	+	mltA	LU632_RS06225	0.21	+0.2
1,192,931	+	mltA	LU632_RS06225	0.21	+0.9
1,192,932	-	mltA	LU632_RS06225	0.21	+1.4
1,192,999	+	mltA	LU632_RS06225	0.27	-0.3
1,193,003	+	mltA	LU632_RS06225	0.27	-0.6
1,193,004	-	mltA	LU632_RS06225	0.27	-1.2
1,193,004	-	mltA	LU632_RS06225	0.27	-0.5
1,193,028	-	mltA	LU632_RS06225	0.29	-0.4
1,193,055	-	mltA	LU632_RS06225	0.32	-1.1
1,193,055	-	mltA	LU632_RS06225	0.32	+0.6
1,193,055	-	mltA	LU632_RS06225	0.32	+0.7
1,193,055	-	mltA	LU632_RS06225	0.32	-2.5
1,193,055	-	mltA	LU632_RS06225	0.32	+0.6
1,193,055	-	mltA	LU632_RS06225	0.32	-0.5
1,193,056	+	mltA	LU632_RS06225	0.32	-0.0
1,193,056	+	mltA	LU632_RS06225	0.32	+2.5
1,193,057	-	mltA	LU632_RS06225	0.32	+0.1
1,193,146	+	mltA	LU632_RS06225	0.40	+1.8
1,193,159	+	mltA	LU632_RS06225	0.41	+1.2
1,193,160	-	mltA	LU632_RS06225	0.41	+0.3
1,193,183	+	mltA	LU632_RS06225	0.43	-0.8
1,193,216	-	mltA	LU632_RS06225	0.46	-1.8
1,193,247	-	mltA	LU632_RS06225	0.49	+0.6
1,193,247	-	mltA	LU632_RS06225	0.49	-0.9
1,193,247	-	mltA	LU632_RS06225	0.49	-0.3
1,193,255	+	mltA	LU632_RS06225	0.49	-0.5
1,193,297	-	mltA	LU632_RS06225	0.53	+1.5
1,193,458	+	mltA	LU632_RS06225	0.67	-0.1
1,193,590	+	mltA	LU632_RS06225	0.79	-0.8
1,193,590	+	mltA	LU632_RS06225	0.79	+1.9
1,193,596	+	mltA	LU632_RS06225	0.79	+1.3
1,193,612	+	mltA	LU632_RS06225	0.81	-1.1
1,193,722	+				+1.2
1,193,729	+				+0.0
1,193,942	-				+0.2
1,193,979	+	tcdA	LU632_RS06230	0.11	+0.6
1,193,979	+	tcdA	LU632_RS06230	0.11	+1.2
1,193,980	-	tcdA	LU632_RS06230	0.12	+0.5
1,194,005	+	tcdA	LU632_RS06230	0.15	-0.2
1,194,005	+	tcdA	LU632_RS06230	0.15	-1.0
1,194,060	+	tcdA	LU632_RS06230	0.22	-1.4
1,194,198	-	tcdA	LU632_RS06230	0.39	-1.1
1,194,234	-	tcdA	LU632_RS06230	0.43	+0.3
1,194,234	-	tcdA	LU632_RS06230	0.43	-0.4
1,194,254	-	tcdA	LU632_RS06230	0.46	-0.1
1,194,319	-	tcdA	LU632_RS06230	0.54	-2.6
1,194,319	-	tcdA	LU632_RS06230	0.54	-0.5
1,194,333	+	tcdA	LU632_RS06230	0.56	-1.9
1,194,420	+	tcdA	LU632_RS06230	0.67	-0.3
1,194,425	+	tcdA	LU632_RS06230	0.67	+0.5
1,194,485	+	tcdA	LU632_RS06230	0.75	-0.6
1,194,485	+	tcdA	LU632_RS06230	0.75	+0.1
1,194,485	+	tcdA	LU632_RS06230	0.75	-1.5
1,194,517	+	tcdA	LU632_RS06230	0.79	-0.3
1,194,518	-	tcdA	LU632_RS06230	0.79	-2.4
1,194,654	-				-0.5
1,194,791	-	csdE	LU632_RS06235	0.23	-0.1
1,194,796	+	csdE	LU632_RS06235	0.24	-0.5