Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06130

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,167,998	+				-0.7
1,167,999	-				-0.0
1,168,059	+				-0.5
1,168,084	+				+1.0
1,168,084	+				-0.8
1,168,084	+				-0.4
1,168,085	-				+0.9
1,168,085	-				-1.0
1,168,085	-				-2.0
1,168,267	+				+2.7
1,168,326	-				-0.7
1,168,480	+				-0.6
1,168,480	+				+0.1
1,168,481	-				+1.0
1,168,519	-		LU632_RS06125	0.12	+0.9
1,168,731	-		LU632_RS06125	0.51	-0.8
1,168,812	-		LU632_RS06125	0.66	-0.5
1,168,882	+		LU632_RS06125	0.78	-0.0
1,168,889	+		LU632_RS06125	0.80	-1.9
1,168,923	+		LU632_RS06125	0.86	+2.2
1,168,923	+		LU632_RS06125	0.86	-1.9
1,168,976	+				+1.9
1,169,027	-		LU632_RS06130	0.19	+0.6
1,169,104	+		LU632_RS06130	0.66	+0.2
1,169,105	-		LU632_RS06130	0.67	-1.6
1,169,118	+		LU632_RS06130	0.75	+2.2
1,169,118	+		LU632_RS06130	0.75	+1.1
1,169,159	+				-0.3
1,169,159	+				+0.8
1,169,160	-				-0.5
1,169,169	+				+1.1
1,169,169	+				+0.9
1,169,169	+				-0.3
1,169,170	-				+0.5
1,169,228	-				+0.1
1,169,233	-				-0.5
1,169,237	-				+0.4
1,169,237	-				+0.2
1,169,262	+				-0.6
1,169,262	+				+0.2
1,169,262	+				+0.5
1,169,263	-				+0.8
1,169,385	-		LU632_RS06135	0.32	+1.5
1,169,492	-		LU632_RS06135	0.60	+0.4
1,169,502	+		LU632_RS06135	0.62	-0.9
1,169,503	-		LU632_RS06135	0.63	-1.0
1,169,564	+		LU632_RS06135	0.78	-0.7
1,169,620	+				-1.5
1,169,626	+				+3.5
1,169,637	+				-0.9
1,169,638	-				-0.0
1,169,638	-				+0.3
1,169,641	+				-1.0
1,169,778	+				+0.2
1,169,778	+				-0.2
1,169,778	+				-0.0
1,169,861	+		LU632_RS06140	0.14	+1.1
1,169,863	+		LU632_RS06140	0.14	+3.2
1,169,863	+		LU632_RS06140	0.14	+0.5
1,169,863	+		LU632_RS06140	0.14	-1.5
1,169,863	+		LU632_RS06140	0.14	+0.8
1,169,863	+		LU632_RS06140	0.14	-0.8
1,169,864	-		LU632_RS06140	0.14	-0.8
1,169,864	-		LU632_RS06140	0.14	+0.6
1,169,864	-		LU632_RS06140	0.14	+1.0
1,169,868	-		LU632_RS06140	0.14	-0.5
1,169,868	-		LU632_RS06140	0.14	+0.3
1,169,868	-		LU632_RS06140	0.14	-0.0
1,169,977	-		LU632_RS06140	0.23	+0.1