Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06025

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,142,147	+				-0.3
1,142,190	+				-1.2
1,142,190	+				-1.6
1,142,191	-				+0.7
1,142,207	+				-0.1
1,142,237	+		LU632_RS06020	0.13	-0.5
1,142,237	+		LU632_RS06020	0.13	+1.0
1,142,239	+		LU632_RS06020	0.14	-0.4
1,142,240	-		LU632_RS06020	0.14	-1.8
1,142,240	-		LU632_RS06020	0.14	+0.4
1,142,240	-		LU632_RS06020	0.14	-0.1
1,142,240	-		LU632_RS06020	0.14	+0.3
1,142,247	+		LU632_RS06020	0.15	-1.6
1,142,248	-		LU632_RS06020	0.15	+0.1
1,142,248	-		LU632_RS06020	0.15	+0.7
1,142,269	+		LU632_RS06020	0.18	+0.0
1,142,269	+		LU632_RS06020	0.18	+1.2
1,142,281	+		LU632_RS06020	0.20	+1.2
1,142,312	+		LU632_RS06020	0.24	+0.1
1,142,313	-		LU632_RS06020	0.24	+0.7
1,142,351	-		LU632_RS06020	0.30	+1.5
1,142,382	-		LU632_RS06020	0.34	+1.5
1,142,382	-		LU632_RS06020	0.34	-0.5
1,142,382	-		LU632_RS06020	0.34	+0.3
1,142,382	-		LU632_RS06020	0.34	-0.3
1,142,383	+		LU632_RS06020	0.34	-0.1
1,142,383	+		LU632_RS06020	0.34	-1.0
1,142,383	+		LU632_RS06020	0.34	-1.6
1,142,384	-		LU632_RS06020	0.34	+0.8
1,142,384	-		LU632_RS06020	0.34	+1.0
1,142,384	-		LU632_RS06020	0.34	-0.7
1,142,384	-		LU632_RS06020	0.34	-0.3
1,142,385	+		LU632_RS06020	0.34	-0.4
1,142,385	+		LU632_RS06020	0.34	+0.4
1,142,385	+		LU632_RS06020	0.34	-0.2
1,142,385	+		LU632_RS06020	0.34	-0.6
1,142,385	+		LU632_RS06020	0.34	+2.3
1,142,386	-		LU632_RS06020	0.34	+0.9
1,142,386	-		LU632_RS06020	0.34	+1.5
1,142,386	-		LU632_RS06020	0.34	-0.9
1,142,386	-		LU632_RS06020	0.34	+0.5
1,142,386	-		LU632_RS06020	0.34	+1.8
1,142,386	-		LU632_RS06020	0.34	-1.5
1,142,386	-		LU632_RS06020	0.34	-2.7
1,142,463	+		LU632_RS06020	0.45	+0.7
1,142,491	+		LU632_RS06020	0.49	-2.2
1,142,491	+		LU632_RS06020	0.49	+2.6
1,142,527	+		LU632_RS06020	0.54	+0.4
1,142,727	-		LU632_RS06020	0.83	-1.2
1,142,787	+				-0.8
1,142,788	-				+1.3
1,142,788	-				-2.2
1,142,797	+				+3.8
1,142,798	-				+0.1
1,142,829	-				-0.6
1,142,897	-				+0.4
1,142,945	+				-1.1
1,142,950	+				-0.1
1,142,950	+				-1.6
1,142,950	+				+0.5
1,143,103	+				-0.3
1,143,103	+				+0.6
1,143,103	+				-0.4
1,143,197	+				-0.1
1,143,197	+				-1.3
1,143,197	+				-0.7
1,143,197	+				+0.3
1,143,198	-				+1.0
1,143,198	-				+0.1
1,143,198	-				+0.4
1,143,198	-				+0.5
1,143,215	+		LU632_RS06025	0.11	+2.0
1,143,215	+		LU632_RS06025	0.11	+1.3
1,143,215	+		LU632_RS06025	0.11	-1.2
1,143,216	-		LU632_RS06025	0.11	-0.2
1,143,299	+		LU632_RS06025	0.25	+0.5
1,143,299	+		LU632_RS06025	0.25	+0.5
1,143,299	+		LU632_RS06025	0.25	-0.1
1,143,299	+		LU632_RS06025	0.25	+0.7
1,143,299	+		LU632_RS06025	0.25	-2.1
1,143,299	+		LU632_RS06025	0.25	+0.8
1,143,299	+		LU632_RS06025	0.25	+0.7
1,143,300	-		LU632_RS06025	0.25	+0.2
1,143,300	-		LU632_RS06025	0.25	-0.1
1,143,367	-		LU632_RS06025	0.36	+0.7
1,143,444	-		LU632_RS06025	0.48	+0.8
1,143,449	+		LU632_RS06025	0.49	-1.0
1,143,449	+		LU632_RS06025	0.49	-0.1
1,143,449	+		LU632_RS06025	0.49	-0.4
1,143,449	+		LU632_RS06025	0.49	-0.5
1,143,453	+		LU632_RS06025	0.49	+2.2
1,143,454	-		LU632_RS06025	0.50	+0.5
1,143,454	-		LU632_RS06025	0.50	-0.8
1,143,518	+		LU632_RS06025	0.60	-0.2
1,143,518	+		LU632_RS06025	0.60	-0.1
1,143,518	+		LU632_RS06025	0.60	-1.3
1,143,518	+		LU632_RS06025	0.60	+1.3
1,143,518	+		LU632_RS06025	0.60	+0.4
1,143,518	+		LU632_RS06025	0.60	-0.0
1,143,518	+		LU632_RS06025	0.60	-0.1
1,143,519	-		LU632_RS06025	0.60	-0.6
1,143,655	-		LU632_RS06025	0.82	-0.2
1,143,675	+		LU632_RS06025	0.85	+0.5
1,143,676	-		LU632_RS06025	0.85	+0.5
1,143,711	-				+0.7
1,143,711	-				-2.0
1,143,790	-				+0.5
1,143,890	+				+0.7
1,143,900	+				-0.3
1,143,901	-				+0.8
1,143,935	+				-0.2
1,143,935	+				-1.3
1,144,019	-				+3.2
1,144,092	+				+0.3
1,144,102	+				-1.5
1,144,103	-				+1.5
1,144,103	-				-2.2
1,144,220	-				-0.2
1,144,401	+				-0.7
1,144,618	+		LU632_RS06030	0.30	+0.8
1,144,677	+		LU632_RS06030	0.35	+0.7
1,144,677	+		LU632_RS06030	0.35	-1.9
1,144,677	+		LU632_RS06030	0.35	+0.8
1,144,743	+		LU632_RS06030	0.41	-2.1
1,144,743	+		LU632_RS06030	0.41	+1.2
1,144,747	+		LU632_RS06030	0.42	+0.6
1,144,747	+		LU632_RS06030	0.42	-0.6
1,144,747	+		LU632_RS06030	0.42	-0.0