Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05470

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,054,648	+				-0.0
1,054,649	-				+1.0
1,054,659	-				-0.8
1,054,663	+				-0.0
1,054,663	+				-0.8
1,054,775	-		LU632_RS05465	0.14	+1.5
1,054,877	-		LU632_RS05465	0.25	+1.0
1,054,928	+		LU632_RS05465	0.30	-1.3
1,054,972	-		LU632_RS05465	0.34	+0.3
1,055,039	+		LU632_RS05465	0.41	-2.3
1,055,040	-		LU632_RS05465	0.41	-0.4
1,055,075	+		LU632_RS05465	0.44	-0.5
1,055,097	-		LU632_RS05465	0.47	+0.7
1,055,097	-		LU632_RS05465	0.47	+0.4
1,055,135	+		LU632_RS05465	0.51	-1.3
1,055,135	+		LU632_RS05465	0.51	-0.0
1,055,389	+		LU632_RS05465	0.76	+2.0
1,055,394	-		LU632_RS05465	0.77	-0.4
1,055,522	+		LU632_RS05465	0.89	+3.5
1,055,522	+		LU632_RS05465	0.89	+0.0
1,055,523	-		LU632_RS05465	0.89	-0.0
1,056,097	-				-0.8
1,056,454	-		LU632_RS05475	0.70	-1.3
1,056,505	-		LU632_RS05475	0.79	-0.5
1,056,550	-		LU632_RS05475	0.87	-0.5
1,056,552	-		LU632_RS05475	0.87	-1.5
1,056,584	-				-1.0
1,056,584	-				-0.5
1,056,794	-				-0.3
1,056,794	-				+1.0