Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04870 and LU632_RS04875 are separated by 176 nucleotides LU632_RS04875 and LU632_RS04880 are separated by 13 nucleotides LU632_RS04880 and LU632_RS04885 are separated by 54 nucleotides LU632_RS04885 and LU632_RS04890 are separated by 650 nucleotides
LU632_RS04870: LU632_RS04870 - STY4528 family pathogenicity island replication protein, at 951,529 to 952,767
_RS04870
LU632_RS04875: LU632_RS04875 - TIGR03761 family integrating conjugative element protein, at 952,944 to 953,699
_RS04875
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
LU632_RS04885: LU632_RS04885 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 955,490 to 955,759
_RS04885
LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874
_RS04890
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 952.724 kb on - strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.820 kb on - strand at 952.824 kb on - strand at 952.940 kb on - strand at 952.940 kb on - strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.943 kb on + strand at 953.043 kb on - strand, within LU632_RS04875 at 953.049 kb on + strand, within LU632_RS04875 at 953.090 kb on + strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.189 kb on + strand, within LU632_RS04875 at 953.205 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.443 kb on - strand, within LU632_RS04875 at 953.476 kb on - strand, within LU632_RS04875 at 953.512 kb on - strand, within LU632_RS04875 at 953.529 kb on + strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.622 kb on - strand, within LU632_RS04875 at 953.722 kb on + strand at 953.722 kb on + strand at 953.754 kb on + strand at 953.754 kb on + strand at 953.796 kb on + strand at 953.867 kb on - strand at 953.884 kb on - strand at 953.923 kb on - strand, within LU632_RS04880 at 953.976 kb on + strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 954.062 kb on - strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.084 kb on - strand, within LU632_RS04880 at 954.159 kb on + strand, within LU632_RS04880 at 954.172 kb on + strand, within LU632_RS04880 at 954.173 kb on - strand, within LU632_RS04880 at 954.236 kb on - strand, within LU632_RS04880 at 954.541 kb on - strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.645 kb on - strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.691 kb on + strand, within LU632_RS04880 at 954.728 kb on + strand, within LU632_RS04880 at 954.844 kb on - strand, within LU632_RS04880 at 954.901 kb on + strand, within LU632_RS04880 at 954.909 kb on + strand, within LU632_RS04880 at 954.922 kb on + strand, within LU632_RS04880 at 954.976 kb on - strand, within LU632_RS04880 at 955.040 kb on + strand, within LU632_RS04880 at 955.041 kb on - strand, within LU632_RS04880 at 955.078 kb on - strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.358 kb on - strand at 955.457 kb on - strand at 955.483 kb on + strand at 955.588 kb on + strand, within LU632_RS04885 at 955.589 kb on - strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.640 kb on - strand, within LU632_RS04885 at 955.657 kb on + strand, within LU632_RS04885 at 955.771 kb on - strand at 955.783 kb on + strand at 955.784 kb on - strand at 955.784 kb on - strand at 955.798 kb on + strand at 955.995 kb on - strand at 956.108 kb on + strand at 956.108 kb on + strand at 956.207 kb on - strand at 956.219 kb on - strand at 956.219 kb on - strand at 956.265 kb on + strand at 956.319 kb on + strand at 956.378 kb on + strand at 956.379 kb on - strand at 956.383 kb on + strand at 956.390 kb on - strand at 956.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 952,724 - +0.6 952,755 + -0.7 952,755 + -0.6 952,755 + +0.0 952,755 + +1.3 952,755 + -1.8 952,756 - -0.0 952,756 - -0.6 952,756 - +1.2 952,820 - +0.9 952,824 - -2.5 952,940 - +1.8 952,940 - -1.6 952,941 + +0.8 952,941 + -2.0 952,941 + +1.0 952,941 + -1.3 952,942 - -0.8 952,942 - -0.4 952,942 - -0.6 952,942 - -1.6 952,942 - -1.3 952,942 - -1.3 952,943 + -0.5 953,043 - LU632_RS04875 0.13 -0.0 953,049 + LU632_RS04875 0.14 +0.5 953,090 + LU632_RS04875 0.19 -0.4 953,136 - LU632_RS04875 0.25 +2.3 953,136 - LU632_RS04875 0.25 -1.0 953,189 + LU632_RS04875 0.32 -0.4 953,205 - LU632_RS04875 0.35 +0.5 953,259 - LU632_RS04875 0.42 -1.0 953,259 - LU632_RS04875 0.42 +1.2 953,443 - LU632_RS04875 0.66 -0.0 953,476 - LU632_RS04875 0.70 +0.2 953,512 - LU632_RS04875 0.75 +0.9 953,529 + LU632_RS04875 0.77 +0.9 953,530 - LU632_RS04875 0.78 -2.9 953,530 - LU632_RS04875 0.78 +1.3 953,532 + LU632_RS04875 0.78 -0.0 953,532 + LU632_RS04875 0.78 -0.6 953,533 - LU632_RS04875 0.78 +0.2 953,533 - LU632_RS04875 0.78 +0.3 953,622 - LU632_RS04875 0.90 +0.8 953,722 + +0.3 953,722 + -1.0 953,754 + -1.1 953,754 + +1.1 953,796 + -0.0 953,867 - -0.0 953,884 - -0.5 953,923 - LU632_RS04880 0.12 +0.4 953,976 + LU632_RS04880 0.15 +0.6 953,977 - LU632_RS04880 0.15 +0.8 953,977 - LU632_RS04880 0.15 -1.8 953,977 - LU632_RS04880 0.15 -0.7 954,062 - LU632_RS04880 0.20 +1.2 954,083 + LU632_RS04880 0.21 -0.2 954,083 + LU632_RS04880 0.21 -0.5 954,084 - LU632_RS04880 0.22 +0.7 954,159 + LU632_RS04880 0.26 -0.4 954,172 + LU632_RS04880 0.27 -0.2 954,173 - LU632_RS04880 0.27 -0.2 954,236 - LU632_RS04880 0.30 -0.8 954,541 - LU632_RS04880 0.48 +0.8 954,644 + LU632_RS04880 0.54 +1.8 954,644 + LU632_RS04880 0.54 +0.2 954,644 + LU632_RS04880 0.54 -1.5 954,645 - LU632_RS04880 0.54 -0.3 954,646 + LU632_RS04880 0.54 -0.4 954,646 + LU632_RS04880 0.54 +0.4 954,646 + LU632_RS04880 0.54 -1.6 954,691 + LU632_RS04880 0.57 -0.8 954,728 + LU632_RS04880 0.59 +0.4 954,844 - LU632_RS04880 0.66 +0.7 954,901 + LU632_RS04880 0.69 +2.8 954,909 + LU632_RS04880 0.69 +0.3 954,922 + LU632_RS04880 0.70 -1.2 954,976 - LU632_RS04880 0.73 -1.0 955,040 + LU632_RS04880 0.77 +0.8 955,041 - LU632_RS04880 0.77 +0.5 955,078 - LU632_RS04880 0.79 +1.0 955,134 + LU632_RS04880 0.82 -0.1 955,134 + LU632_RS04880 0.82 -0.5 955,134 + LU632_RS04880 0.82 +1.0 955,135 - LU632_RS04880 0.83 -1.5 955,135 - LU632_RS04880 0.83 +1.3 955,358 - +0.4 955,457 - +0.9 955,483 + +1.1 955,588 + LU632_RS04885 0.36 +0.2 955,589 - LU632_RS04885 0.37 -1.5 955,639 + LU632_RS04885 0.55 +0.5 955,639 + LU632_RS04885 0.55 +0.1 955,639 + LU632_RS04885 0.55 +1.9 955,639 + LU632_RS04885 0.55 +0.8 955,639 + LU632_RS04885 0.55 -0.1 955,639 + LU632_RS04885 0.55 +0.8 955,640 - LU632_RS04885 0.56 -0.4 955,657 + LU632_RS04885 0.62 -1.6 955,771 - -0.9 955,783 + -1.0 955,784 - +2.1 955,784 - -0.3 955,798 + -0.0 955,995 - -0.5 956,108 + +0.2 956,108 + +0.1 956,207 - +0.8 956,219 - -0.1 956,219 - -1.9 956,265 + +0.0 956,319 + -0.3 956,378 + -0.8 956,379 - +0.6 956,383 + -1.3 956,390 - +0.8 956,424 + -0.6
Or see this region's nucleotide sequence