Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04560 and LU632_RS04565 are separated by 73 nucleotides LU632_RS04565 and LU632_RS04570 overlap by 61 nucleotides LU632_RS04570 and LU632_RS04575 are separated by 147 nucleotides LU632_RS04575 and LU632_RS04580 are separated by 89 nucleotides LU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
LU632_RS04565: LU632_RS04565 - restriction endonuclease, at 895,140 to 895,556
_RS04565
LU632_RS04570: LU632_RS04570 - hypothetical protein, at 895,496 to 895,918
_RS04570
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981
_RS04580
LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331
_RS04585
Position (kb) 896
897
898 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 895.088 kb on + strand at 895.089 kb on - strand at 895.123 kb on - strand at 895.141 kb on + strand at 895.180 kb on + strand at 895.182 kb on + strand, within LU632_RS04565 at 895.328 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.627 kb on + strand, within LU632_RS04570 at 895.627 kb on + strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 897.378 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.449 kb on + strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.586 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.759 kb on + strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 898.021 kb on + strand, within LU632_RS04585 at 898.022 kb on - strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.030 kb on - strand, within LU632_RS04585 at 898.045 kb on - strand, within LU632_RS04585 at 898.062 kb on - strand, within LU632_RS04585 at 898.084 kb on + strand, within LU632_RS04585 at 898.119 kb on - strand, within LU632_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 895,088 + -0.0 895,089 - -0.3 895,123 - +0.1 895,141 + +0.3 895,180 + +0.8 895,182 + LU632_RS04565 0.10 +1.5 895,328 + LU632_RS04565 0.45 +1.4 895,450 + LU632_RS04565 0.74 +2.0 895,450 + LU632_RS04565 0.74 -0.5 895,450 + LU632_RS04565 0.74 +0.5 895,461 - LU632_RS04565 0.77 -0.5 895,461 - LU632_RS04565 0.77 +0.7 895,627 + LU632_RS04570 0.31 +1.2 895,627 + LU632_RS04570 0.31 +0.5 895,632 - LU632_RS04570 0.32 +0.4 895,632 - LU632_RS04570 0.32 +0.5 895,716 + LU632_RS04570 0.52 -1.5 895,716 + LU632_RS04570 0.52 +0.1 895,716 + LU632_RS04570 0.52 -0.8 897,378 + -0.9 897,436 + -0.0 897,436 + -0.8 897,436 + -2.4 897,436 + +1.3 897,436 + +1.4 897,437 - +1.1 897,437 - -0.4 897,437 - -0.3 897,437 - -0.7 897,449 + LU632_RS04580 0.12 +0.5 897,583 - LU632_RS04580 0.34 -0.4 897,583 - LU632_RS04580 0.34 -0.5 897,586 - LU632_RS04580 0.34 -0.0 897,747 - LU632_RS04580 0.61 +0.2 897,747 - LU632_RS04580 0.61 -0.5 897,747 - LU632_RS04580 0.61 +1.2 897,759 + LU632_RS04580 0.63 +4.0 897,762 - LU632_RS04580 0.64 -1.0 897,762 - LU632_RS04580 0.64 -1.3 897,762 - LU632_RS04580 0.64 -0.2 897,842 + LU632_RS04580 0.77 +0.5 897,842 + LU632_RS04580 0.77 +0.3 897,843 - LU632_RS04580 0.77 -0.0 897,843 - LU632_RS04580 0.77 -0.8 898,021 + LU632_RS04585 0.11 -0.0 898,022 - LU632_RS04585 0.11 +2.9 898,025 + LU632_RS04585 0.12 +0.9 898,025 + LU632_RS04585 0.12 +0.2 898,025 + LU632_RS04585 0.12 +0.2 898,025 + LU632_RS04585 0.12 +1.0 898,025 + LU632_RS04585 0.12 +0.7 898,026 - LU632_RS04585 0.12 -2.0 898,026 - LU632_RS04585 0.12 +1.1 898,029 + LU632_RS04585 0.13 -1.3 898,029 + LU632_RS04585 0.13 -1.9 898,030 - LU632_RS04585 0.13 -0.5 898,045 - LU632_RS04585 0.18 -1.4 898,062 - LU632_RS04585 0.22 +1.0 898,084 + LU632_RS04585 0.29 -0.8 898,119 - LU632_RS04585 0.39 +3.2
Or see this region's nucleotide sequence