Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04525 and LU632_RS04530 overlap by 11 nucleotides LU632_RS04530 and LU632_RS04535 are separated by 343 nucleotides LU632_RS04535 and LU632_RS04540 are separated by 98 nucleotides LU632_RS04540 and LU632_RS04545 are separated by 238 nucleotides
LU632_RS04525: LU632_RS04525 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 888,318 to 888,572
_RS04525
LU632_RS04530: LU632_RS04530 - type II toxin-antitoxin system RelE/ParE family toxin, at 888,562 to 888,852
_RS04530
LU632_RS04535: LU632_RS04535 - IS91 family transposase, at 889,196 to 890,419
_RS04535
LU632_RS04540: LU632_RS04540 - recombinase family protein, at 890,518 to 890,937
_RS04540
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.782 kb on + strand, within LU632_RS04530 at 888.783 kb on - strand, within LU632_RS04530 at 888.851 kb on - strand at 888.915 kb on - strand at 888.954 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.546 kb on + strand at 890.546 kb on + strand at 890.568 kb on - strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.635 kb on - strand, within LU632_RS04540 at 890.657 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.682 kb on - strand, within LU632_RS04540 at 890.779 kb on - strand, within LU632_RS04540 at 890.880 kb on + strand, within LU632_RS04540 at 890.881 kb on - strand, within LU632_RS04540 at 891.019 kb on + strand at 891.019 kb on + strand at 891.023 kb on + strand at 891.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 888,609 + LU632_RS04530 0.16 -0.2 888,609 + LU632_RS04530 0.16 +0.3 888,609 + LU632_RS04530 0.16 -0.5 888,782 + LU632_RS04530 0.76 -0.8 888,783 - LU632_RS04530 0.76 +1.0 888,851 - -0.5 888,915 - +0.6 888,954 + -0.0 890,500 + -0.6 890,500 + +0.8 890,500 + -0.0 890,546 + +0.2 890,546 + +1.9 890,568 - LU632_RS04540 0.12 -1.1 890,634 + LU632_RS04540 0.28 +0.8 890,634 + LU632_RS04540 0.28 -1.3 890,635 - LU632_RS04540 0.28 +0.7 890,657 + LU632_RS04540 0.33 -0.9 890,669 + LU632_RS04540 0.36 +0.6 890,669 + LU632_RS04540 0.36 -0.9 890,682 - LU632_RS04540 0.39 +4.3 890,779 - LU632_RS04540 0.62 -1.6 890,880 + LU632_RS04540 0.86 +0.3 890,881 - LU632_RS04540 0.86 +2.3 891,019 + -1.6 891,019 + +1.8 891,023 + +0.3 891,060 + +1.8
Or see this region's nucleotide sequence