Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04475 and LU632_RS04480 are separated by 113 nucleotides LU632_RS04480 and LU632_RS04485 are separated by 101 nucleotides LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides LU632_RS04490 and LU632_RS04495 overlap by 41 nucleotides LU632_RS04495 and LU632_RS04500 are separated by 238 nucleotides
LU632_RS04475: LU632_RS04475 - hypothetical protein, at 881,988 to 882,233
_RS04475
LU632_RS04480: LU632_RS04480 - helix-turn-helix transcriptional regulator, at 882,347 to 882,751
_RS04480
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
LU632_RS04495: LU632_RS04495 - hypothetical protein, at 884,011 to 884,283
_RS04495
LU632_RS04500: LU632_RS04500 - hypothetical protein, at 884,522 to 884,725
_RS04500
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 881.981 kb on + strand at 882.035 kb on + strand, within LU632_RS04475 at 882.285 kb on - strand at 882.497 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.638 kb on + strand, within LU632_RS04480 at 882.639 kb on - strand, within LU632_RS04480 at 882.799 kb on - strand at 882.800 kb on + strand at 882.938 kb on + strand at 883.052 kb on + strand, within LU632_RS04485 at 883.056 kb on - strand, within LU632_RS04485 at 883.421 kb on - strand, within LU632_RS04485 at 883.829 kb on + strand, within LU632_RS04490 at 883.830 kb on - strand, within LU632_RS04490 at 883.833 kb on - strand, within LU632_RS04490 at 883.916 kb on - strand, within LU632_RS04490 at 883.918 kb on + strand, within LU632_RS04490 at 883.919 kb on - strand, within LU632_RS04490 at 884.088 kb on + strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.114 kb on - strand, within LU632_RS04495 at 884.122 kb on - strand, within LU632_RS04495 at 884.598 kb on + strand, within LU632_RS04500 at 884.598 kb on + strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.699 kb on - strand, within LU632_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 881,981 + -0.8 882,035 + LU632_RS04475 0.19 +3.9 882,285 - +0.1 882,497 + LU632_RS04480 0.37 +1.4 882,634 + LU632_RS04480 0.71 +1.8 882,634 + LU632_RS04480 0.71 -1.6 882,638 + LU632_RS04480 0.72 -1.3 882,639 - LU632_RS04480 0.72 +0.5 882,799 - +2.0 882,800 + +1.3 882,938 + -1.2 883,052 + LU632_RS04485 0.23 -0.4 883,056 - LU632_RS04485 0.24 +0.3 883,421 - LU632_RS04485 0.67 -0.3 883,829 + LU632_RS04490 0.36 +1.4 883,830 - LU632_RS04490 0.37 +2.0 883,833 - LU632_RS04490 0.38 +0.1 883,916 - LU632_RS04490 0.61 +1.5 883,918 + LU632_RS04490 0.62 +0.4 883,919 - LU632_RS04490 0.62 +0.4 884,088 + LU632_RS04495 0.28 -0.0 884,089 - LU632_RS04495 0.29 -0.0 884,089 - LU632_RS04495 0.29 -0.3 884,114 - LU632_RS04495 0.38 +1.3 884,122 - LU632_RS04495 0.41 -1.5 884,598 + LU632_RS04500 0.37 -0.2 884,598 + LU632_RS04500 0.37 -0.9 884,599 - LU632_RS04500 0.38 +2.2 884,599 - LU632_RS04500 0.38 +1.5 884,599 - LU632_RS04500 0.38 +0.7 884,599 - LU632_RS04500 0.38 +0.2 884,599 - LU632_RS04500 0.38 +0.5 884,699 - LU632_RS04500 0.87 +0.3
Or see this region's nucleotide sequence