Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04440 and LU632_RS04445 are separated by 65 nucleotides LU632_RS04445 and LU632_RS04450 are separated by 110 nucleotides LU632_RS04450 and LU632_RS04455 are separated by 2 nucleotides LU632_RS04455 and LU632_RS04460 are separated by 209 nucleotides LU632_RS04460 and LU632_RS04465 overlap by 24 nucleotides
LU632_RS04440: LU632_RS04440 - IS481 family transposase, at 877,256 to 878,296
_RS04440
LU632_RS04445: LU632_RS04445 - hypothetical protein, at 878,362 to 878,622
_RS04445
LU632_RS04450: LU632_RS04450 - SprT-like domain-containing protein, at 878,733 to 879,551
_RS04450
LU632_RS04455: LU632_RS04455 - antirestriction protein ArdR, at 879,554 to 879,787
_RS04455
LU632_RS04460: LU632_RS04460 - hypothetical protein, at 879,997 to 880,455
_RS04460
LU632_RS04465: LU632_RS04465 - helix-turn-helix domain-containing protein, at 880,432 to 880,548
_RS04465
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 878.486 kb on - strand, within LU632_RS04445 at 878.486 kb on - strand, within LU632_RS04445 at 878.613 kb on - strand at 878.613 kb on - strand at 878.877 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.527 kb on - strand at 879.622 kb on + strand, within LU632_RS04455 at 879.622 kb on + strand, within LU632_RS04455 at 879.625 kb on + strand, within LU632_RS04455 at 879.697 kb on - strand, within LU632_RS04455 at 879.714 kb on - strand, within LU632_RS04455 at 879.715 kb on + strand, within LU632_RS04455 at 879.762 kb on - strand, within LU632_RS04455 at 879.788 kb on - strand at 879.794 kb on - strand at 879.828 kb on - strand at 880.138 kb on + strand, within LU632_RS04460 at 880.234 kb on - strand, within LU632_RS04460 at 880.279 kb on + strand, within LU632_RS04460 at 880.280 kb on - strand, within LU632_RS04460 at 880.340 kb on + strand, within LU632_RS04460 at 880.379 kb on + strand, within LU632_RS04460 at 880.380 kb on - strand, within LU632_RS04460 at 880.409 kb on - strand, within LU632_RS04460 at 880.414 kb on - strand at 880.414 kb on - strand at 880.416 kb on + strand at 880.417 kb on - strand at 880.521 kb on + strand, within LU632_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 878,486 - LU632_RS04445 0.48 +0.4 878,486 - LU632_RS04445 0.48 +0.4 878,613 - +0.7 878,613 - +0.1 878,877 - LU632_RS04450 0.18 -0.8 879,288 - LU632_RS04450 0.68 -1.8 879,288 - LU632_RS04450 0.68 -1.0 879,527 - -0.3 879,622 + LU632_RS04455 0.29 +1.4 879,622 + LU632_RS04455 0.29 +1.4 879,625 + LU632_RS04455 0.30 +1.5 879,697 - LU632_RS04455 0.61 +0.2 879,714 - LU632_RS04455 0.68 -0.2 879,715 + LU632_RS04455 0.69 -1.5 879,762 - LU632_RS04455 0.89 -0.2 879,788 - +1.1 879,794 - +0.4 879,828 - +0.2 880,138 + LU632_RS04460 0.31 -0.2 880,234 - LU632_RS04460 0.52 +0.2 880,279 + LU632_RS04460 0.61 -1.2 880,280 - LU632_RS04460 0.62 -0.6 880,340 + LU632_RS04460 0.75 +0.3 880,379 + LU632_RS04460 0.83 -0.2 880,380 - LU632_RS04460 0.83 +2.3 880,409 - LU632_RS04460 0.90 +1.4 880,414 - -0.1 880,414 - +1.2 880,416 + -0.6 880,417 - -0.3 880,521 + LU632_RS04465 0.76 -0.5
Or see this region's nucleotide sequence