Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04385 and LU632_RS04390 overlap by 7 nucleotides LU632_RS04390 and LU632_RS04395 are separated by 27 nucleotides LU632_RS04395 and LU632_RS04400 are separated by 27 nucleotides LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides
LU632_RS04385: LU632_RS04385 - hypothetical protein, at 867,174 to 867,617
_RS04385
LU632_RS04390: LU632_RS04390 - N-acetylmuramoyl-L-alanine amidase, at 867,611 to 868,225
_RS04390
LU632_RS04395: LU632_RS04395 - type VI secretion system tube protein Hcp, at 868,253 to 868,735
_RS04395
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
Position (kb) 868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 867.253 kb on - strand, within LU632_RS04385 at 867.318 kb on - strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.424 kb on - strand, within LU632_RS04385 at 867.762 kb on - strand, within LU632_RS04390 at 868.139 kb on - strand, within LU632_RS04390 at 868.229 kb on + strand at 868.391 kb on - strand, within LU632_RS04395 at 868.391 kb on - strand, within LU632_RS04395 at 868.501 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.555 kb on - strand, within LU632_RS04395 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 867,253 - LU632_RS04385 0.18 +0.7 867,318 - LU632_RS04385 0.32 -0.5 867,423 + LU632_RS04385 0.56 -0.6 867,423 + LU632_RS04385 0.56 -0.4 867,424 - LU632_RS04385 0.56 -0.6 867,762 - LU632_RS04390 0.25 +0.6 868,139 - LU632_RS04390 0.86 -1.7 868,229 + +1.8 868,391 - LU632_RS04395 0.29 -0.2 868,391 - LU632_RS04395 0.29 +0.2 868,501 + LU632_RS04395 0.51 +0.9 868,554 + LU632_RS04395 0.62 -0.3 868,554 + LU632_RS04395 0.62 -0.8 868,555 - LU632_RS04395 0.63 -2.5 868,973 - LU632_RS04400 0.36 -0.6 868,973 - LU632_RS04400 0.36 +1.1 869,006 + LU632_RS04400 0.42 -1.2 869,007 - LU632_RS04400 0.42 +0.1 869,007 - LU632_RS04400 0.42 +0.1 869,046 + LU632_RS04400 0.49 -0.3 869,046 + LU632_RS04400 0.49 +0.4 869,159 - LU632_RS04400 0.68 +1.5 869,345 - -2.9 869,439 + +0.3 869,476 + +1.8 869,515 + +0.5
Or see this region's nucleotide sequence