Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04290 and LU632_RS04295 are separated by 187 nucleotides LU632_RS04295 and LU632_RS04300 are separated by 44 nucleotides LU632_RS04300 and LU632_RS04305 overlap by 9 nucleotides
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
LU632_RS04295: LU632_RS04295 - IS91 family transposase, at 854,411 to 854,548
_RS04295
LU632_RS04300: LU632_RS04300 - IS3 family transposase, at 854,593 to 854,838
_RS04300
LU632_RS04305: LU632_RS04305 - DNA primase, at 854,830 to 855,231
_RS04305
Position (kb) 854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.743 kb on + strand, within LU632_RS04290 at 853.744 kb on - strand, within LU632_RS04290 at 853.771 kb on + strand, within LU632_RS04290 at 853.772 kb on - strand, within LU632_RS04290 at 854.192 kb on + strand at 854.309 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.583 kb on + strand at 854.584 kb on - strand at 854.590 kb on + strand at 854.591 kb on - strand at 854.677 kb on - strand, within LU632_RS04300 at 854.723 kb on + strand, within LU632_RS04300 at 854.813 kb on + strand, within LU632_RS04300 at 854.814 kb on - strand at 854.994 kb on + strand, within LU632_RS04305 at 855.244 kb on - strand at 855.244 kb on - strand at 855.434 kb on - strand at 855.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 853,743 + LU632_RS04290 0.43 +0.5 853,744 - LU632_RS04290 0.43 -0.4 853,771 + LU632_RS04290 0.46 -2.4 853,772 - LU632_RS04290 0.46 +0.8 854,192 + +0.2 854,309 + -0.4 854,424 + -0.1 854,424 + -0.8 854,424 + +0.5 854,424 + +0.5 854,425 - LU632_RS04295 0.10 +0.1 854,425 - LU632_RS04295 0.10 -0.0 854,425 - LU632_RS04295 0.10 -0.0 854,425 - LU632_RS04295 0.10 -1.3 854,425 - LU632_RS04295 0.10 +0.6 854,425 - LU632_RS04295 0.10 +0.5 854,583 + +0.9 854,584 - -1.2 854,590 + -0.5 854,591 - +0.7 854,677 - LU632_RS04300 0.34 -0.5 854,723 + LU632_RS04300 0.53 -1.4 854,813 + LU632_RS04300 0.89 -1.5 854,814 - +2.1 854,994 + LU632_RS04305 0.41 +0.2 855,244 - +0.3 855,244 - +2.0 855,434 - -0.5 855,488 - -0.5
Or see this region's nucleotide sequence