Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04260 and LU632_RS04265 overlap by 4 nucleotides LU632_RS04265 and ulaD overlap by 4 nucleotides ulaD and LU632_RS04275 are separated by 2 nucleotides
LU632_RS04260: LU632_RS04260 - MFS transporter, at 846,902 to 848,200
_RS04260
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.578 kb on + strand, within LU632_RS04260 at 847.579 kb on - strand, within LU632_RS04260 at 847.646 kb on - strand, within LU632_RS04260 at 847.664 kb on + strand, within LU632_RS04260 at 847.688 kb on - strand, within LU632_RS04260 at 847.767 kb on - strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.914 kb on - strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.109 kb on + strand at 848.235 kb on + strand at 848.252 kb on - strand at 848.370 kb on - strand, within LU632_RS04265 at 848.678 kb on - strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.743 kb on + strand, within LU632_RS04265 at 848.749 kb on - strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.854 kb on - strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.162 kb on - strand, within LU632_RS04265 at 849.224 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.300 kb on - strand, within LU632_RS04265 at 849.307 kb on - strand, within LU632_RS04265 at 849.310 kb on + strand, within LU632_RS04265 at 849.311 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.379 kb on - strand, within LU632_RS04265 at 849.673 kb on - strand at 849.876 kb on - strand, within ulaD at 850.090 kb on - strand, within ulaD at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 847,578 + LU632_RS04260 0.52 -2.5 847,579 - LU632_RS04260 0.52 +1.2 847,646 - LU632_RS04260 0.57 +0.2 847,664 + LU632_RS04260 0.59 +0.6 847,688 - LU632_RS04260 0.61 +0.3 847,767 - LU632_RS04260 0.67 +0.6 847,898 + LU632_RS04260 0.77 +0.5 847,898 + LU632_RS04260 0.77 +1.1 847,899 - LU632_RS04260 0.77 -0.8 847,899 - LU632_RS04260 0.77 -0.0 847,899 - LU632_RS04260 0.77 +0.0 847,914 - LU632_RS04260 0.78 +0.4 848,063 + LU632_RS04260 0.89 -1.3 848,063 + LU632_RS04260 0.89 -1.0 848,063 + LU632_RS04260 0.89 +0.3 848,063 + LU632_RS04260 0.89 +0.4 848,063 + LU632_RS04260 0.89 -0.3 848,064 - LU632_RS04260 0.89 -1.3 848,064 - LU632_RS04260 0.89 -0.4 848,065 + LU632_RS04260 0.90 +0.4 848,065 + LU632_RS04260 0.90 +0.3 848,109 + -0.4 848,235 + -0.4 848,252 - -0.4 848,370 - LU632_RS04265 0.12 +2.6 848,678 - LU632_RS04265 0.32 -1.0 848,724 + LU632_RS04265 0.35 +1.7 848,724 + LU632_RS04265 0.35 -1.0 848,724 + LU632_RS04265 0.35 -0.9 848,724 + LU632_RS04265 0.35 +0.6 848,741 + LU632_RS04265 0.37 -1.4 848,741 + LU632_RS04265 0.37 +2.6 848,743 + LU632_RS04265 0.37 -1.4 848,749 - LU632_RS04265 0.37 +0.6 848,853 + LU632_RS04265 0.44 -0.1 848,853 + LU632_RS04265 0.44 +0.6 848,854 - LU632_RS04265 0.44 -2.1 849,076 + LU632_RS04265 0.59 -0.1 849,076 + LU632_RS04265 0.59 -1.8 849,076 + LU632_RS04265 0.59 +0.2 849,077 - LU632_RS04265 0.59 +1.6 849,077 - LU632_RS04265 0.59 -0.0 849,077 - LU632_RS04265 0.59 -0.8 849,077 - LU632_RS04265 0.59 -1.1 849,079 - LU632_RS04265 0.59 +1.6 849,079 - LU632_RS04265 0.59 -0.5 849,162 - LU632_RS04265 0.65 -1.5 849,224 - LU632_RS04265 0.69 +0.6 849,263 - LU632_RS04265 0.72 -0.5 849,263 - LU632_RS04265 0.72 +0.4 849,300 - LU632_RS04265 0.74 -2.1 849,307 - LU632_RS04265 0.75 +0.7 849,310 + LU632_RS04265 0.75 +0.2 849,311 - LU632_RS04265 0.75 -0.3 849,337 - LU632_RS04265 0.77 +0.5 849,337 - LU632_RS04265 0.77 +0.0 849,337 - LU632_RS04265 0.77 -0.2 849,379 - LU632_RS04265 0.80 -0.4 849,673 - -0.5 849,876 - ulaD LU632_RS04270 0.30 -2.5 850,090 - ulaD LU632_RS04270 0.62 -0.2 850,235 - ulaD LU632_RS04270 0.84 -2.7 850,241 - ulaD LU632_RS04270 0.85 +2.2 850,241 - ulaD LU632_RS04270 0.85 +0.3 850,241 - ulaD LU632_RS04270 0.85 +1.1 850,268 + ulaD LU632_RS04270 0.89 -0.1 850,325 + -0.1 850,337 - -0.2 850,338 + -0.0 850,338 + -0.2 850,338 + -0.3 850,339 - -1.5 850,339 - -1.8 850,339 - -1.5 850,339 - -0.9 850,365 + -2.3 850,365 + -0.0 850,366 - +0.8 850,366 - -2.1 850,368 - +0.0 850,368 - +0.4 850,368 - -1.0 850,455 + LU632_RS04275 0.13 -1.9 850,548 + LU632_RS04275 0.24 +0.2 850,592 - LU632_RS04275 0.29 -0.9 850,622 + LU632_RS04275 0.33 +1.6
Or see this region's nucleotide sequence