Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04165 and LU632_RS04170 are separated by 498 nucleotides LU632_RS04170 and katB are separated by 61 nucleotides
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170 at 828.389 kb on + strand at 828.390 kb on - strand at 828.467 kb on - strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.473 kb on - strand at 828.473 kb on - strand at 828.570 kb on + strand at 828.635 kb on - strand, within katB at 828.667 kb on - strand, within katB at 828.675 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.805 kb on - strand, within katB at 828.886 kb on - strand, within katB at 828.931 kb on + strand, within katB at 828.968 kb on - strand, within katB at 828.968 kb on - strand, within katB at 829.079 kb on - strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.233 kb on + strand, within katB at 829.234 kb on - strand, within katB at 829.234 kb on - strand, within katB at 829.314 kb on + strand, within katB at 829.348 kb on - strand, within katB at 829.361 kb on - strand, within katB at 829.364 kb on - strand, within katB at 829.393 kb on + strand, within katB at 829.393 kb on + strand, within katB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 826,888 - -0.2 826,888 - +2.2 826,999 - LU632_RS04165 0.27 +1.3 827,054 + LU632_RS04165 0.37 -1.4 827,058 + LU632_RS04165 0.38 +0.4 827,097 + LU632_RS04165 0.46 -0.1 827,236 + LU632_RS04165 0.73 +1.8 827,236 + LU632_RS04165 0.73 -0.9 827,256 + LU632_RS04165 0.77 -0.0 827,256 + LU632_RS04165 0.77 +0.5 827,257 - LU632_RS04165 0.77 -1.6 827,335 - -1.6 827,336 + +0.9 827,338 + -2.5 827,338 + +0.3 827,338 + -0.0 827,338 + -1.5 827,339 - +0.7 827,404 + -0.7 827,426 + -1.5 827,426 + +0.3 827,431 + -0.3 827,432 - -1.5 827,466 + -0.0 827,503 - -0.0 827,541 + -1.4 827,556 + -1.3 827,557 - -0.1 827,557 - -0.7 827,557 - -0.8 827,558 + -1.4 827,559 - -2.3 827,574 + +1.2 827,575 - +0.4 827,610 - +0.1 827,610 - -0.5 827,637 + -0.3 827,638 - +1.2 827,698 + +1.3 827,699 - +0.3 827,709 - +1.9 827,709 - -1.3 827,826 + -1.1 827,827 - -1.0 827,827 - -0.1 827,829 + +0.6 827,829 + -0.9 827,829 + -0.0 827,830 - +3.2 827,830 - +0.5 827,834 - -0.1 827,834 - +0.2 827,845 + +1.1 827,847 + -1.4 827,847 + -0.0 827,847 + -0.0 827,847 + -1.0 827,848 - -0.6 827,916 + -0.4 827,916 + -1.0 827,916 + +0.9 827,917 - +0.4 827,917 - -0.4 827,920 - -1.8 827,920 - -1.3 828,002 + LU632_RS04170 0.24 +0.4 828,002 + LU632_RS04170 0.24 +0.0 828,002 + LU632_RS04170 0.24 +0.1 828,003 - LU632_RS04170 0.24 -0.0 828,245 + LU632_RS04170 0.69 -1.0 828,245 + LU632_RS04170 0.69 -0.0 828,245 + LU632_RS04170 0.69 -0.1 828,246 - LU632_RS04170 0.69 -0.8 828,309 - LU632_RS04170 0.80 -1.3 828,309 - LU632_RS04170 0.80 -1.3 828,312 + LU632_RS04170 0.81 -1.0 828,313 - LU632_RS04170 0.81 +2.0 828,389 + -0.8 828,390 - -1.3 828,467 - -1.5 828,472 + -1.1 828,472 + +0.1 828,472 + +1.0 828,473 - +1.4 828,473 - +0.1 828,570 + -0.8 828,635 - katB LU632_RS04175 0.11 -0.8 828,667 - katB LU632_RS04175 0.13 +1.1 828,675 + katB LU632_RS04175 0.14 -1.9 828,718 + katB LU632_RS04175 0.16 +1.3 828,718 + katB LU632_RS04175 0.16 -1.3 828,719 - katB LU632_RS04175 0.17 +0.3 828,719 - katB LU632_RS04175 0.17 +0.8 828,719 - katB LU632_RS04175 0.17 -0.8 828,805 - katB LU632_RS04175 0.22 +0.6 828,886 - katB LU632_RS04175 0.28 -1.5 828,931 + katB LU632_RS04175 0.31 +0.0 828,968 - katB LU632_RS04175 0.34 +3.8 828,968 - katB LU632_RS04175 0.34 -0.0 829,079 - katB LU632_RS04175 0.41 +1.1 829,167 + katB LU632_RS04175 0.47 -0.7 829,167 + katB LU632_RS04175 0.47 -0.3 829,167 + katB LU632_RS04175 0.47 -0.2 829,233 + katB LU632_RS04175 0.52 -0.1 829,234 - katB LU632_RS04175 0.52 -1.4 829,234 - katB LU632_RS04175 0.52 +1.0 829,314 + katB LU632_RS04175 0.57 -1.2 829,348 - katB LU632_RS04175 0.59 -1.3 829,361 - katB LU632_RS04175 0.60 -0.2 829,364 - katB LU632_RS04175 0.61 -0.5 829,393 + katB LU632_RS04175 0.63 -1.3 829,393 + katB LU632_RS04175 0.63 +0.8
Or see this region's nucleotide sequence