Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04035

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
805,782	+		LU632_RS04030	0.50	+0.8
805,796	+		LU632_RS04030	0.55	+0.1
805,797	-		LU632_RS04030	0.55	-1.2
805,808	+		LU632_RS04030	0.59	+1.8
805,813	-		LU632_RS04030	0.61	+1.1
805,813	-		LU632_RS04030	0.61	-2.7
805,813	-		LU632_RS04030	0.61	+0.5
805,815	-		LU632_RS04030	0.61	-1.4
805,894	+		LU632_RS04030	0.89	+0.2
805,970	+				+0.6
805,970	+				+1.6
805,970	+				+1.2
805,971	-				-1.9
806,196	-				-0.2
806,239	-				+1.3
806,239	-				+0.3
806,273	-				-1.8
806,276	-				+0.6
806,280	+				-0.9
806,291	+				-0.5
806,345	+				+1.6
806,346	-				+0.4
806,372	-				-0.2
806,382	-				-1.3
806,382	-				-0.2
806,400	+				+1.6
806,472	-				+0.2
806,492	+				+0.1
806,493	-				-0.7
806,604	-				-1.2
806,630	-				-0.8
806,635	+				-1.6
806,692	+				+0.2
806,693	-				-1.7
806,693	-				-0.0
806,731	+				-0.9
806,731	+				+1.3
806,732	-				-0.2
806,732	-				+2.0
806,732	-				+0.2
806,760	+				-1.0
806,776	+				+0.3
806,809	+		LU632_RS04035	0.14	-0.8
806,810	-		LU632_RS04035	0.15	+0.5
806,810	-		LU632_RS04035	0.15	-0.1
806,818	-		LU632_RS04035	0.17	-0.2
806,849	+		LU632_RS04035	0.27	+0.4
806,887	+		LU632_RS04035	0.39	-0.4
806,887	+		LU632_RS04035	0.39	-0.8
806,887	+		LU632_RS04035	0.39	-0.5
806,888	-		LU632_RS04035	0.40	-0.3
807,073	+				+0.8
807,110	+				-0.9
807,111	-				-2.3
807,113	+				+0.6
807,114	-				-1.0
807,131	-				-1.0