Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03635

Experiment: plant=Squash; plant sample=QP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03625 and LU632_RS03630 are separated by 6 nucleotidesLU632_RS03630 and LU632_RS03635 overlap by 8 nucleotidesLU632_RS03635 and LU632_RS03640 overlap by 4 nucleotides LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514 _RS03625 LU632_RS03630: LU632_RS03630 - baseplate assembly protein, at 728,521 to 729,429 _RS03630 LU632_RS03635: LU632_RS03635 - phage tail protein I, at 729,422 to 730,030 _RS03635 LU632_RS03640: LU632_RS03640 - phage tail protein, at 730,027 to 731,085 _RS03640 Position (kb) 729 730 731Strain fitness (log2 ratio) -2 -1 0 1 2 3at 728.446 kb on + strand, within LU632_RS03625at 728.446 kb on + strand, within LU632_RS03625at 728.446 kb on + strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.447 kb on - strand, within LU632_RS03625at 728.470 kb on - strand, within LU632_RS03625at 728.512 kb on + strandat 728.719 kb on - strand, within LU632_RS03630at 729.030 kb on + strand, within LU632_RS03630at 729.090 kb on + strand, within LU632_RS03630at 729.247 kb on + strand, within LU632_RS03630at 729.369 kb on + strandat 729.397 kb on + strandat 729.404 kb on + strandat 729.405 kb on - strandat 729.408 kb on + strandat 729.409 kb on - strandat 729.803 kb on + strand, within LU632_RS03635at 729.804 kb on - strand, within LU632_RS03635at 729.896 kb on + strand, within LU632_RS03635at 729.897 kb on - strand, within LU632_RS03635at 729.897 kb on - strand, within LU632_RS03635at 729.915 kb on - strand, within LU632_RS03635at 729.977 kb on + strandat 729.978 kb on - strandat 730.273 kb on - strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.323 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.356 kb on + strand, within LU632_RS03640at 730.477 kb on + strand, within LU632_RS03640at 730.511 kb on - strand, within LU632_RS03640at 730.582 kb on - strand, within LU632_RS03640at 730.584 kb on - strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.588 kb on - strand, within LU632_RS03640at 730.588 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.684 kb on + strand, within LU632_RS03640at 730.822 kb on - strand, within LU632_RS03640at 730.854 kb on + strand, within LU632_RS03640at 730.854 kb on + strand, within LU632_RS03640at 730.855 kb on - strand, within LU632_RS03640at 730.857 kb on + strand, within LU632_RS03640at 730.858 kb on - strand, within LU632_RS03640at 730.877 kb on + strand, within LU632_RS03640at 730.877 kb on + strand, within LU632_RS03640at 730.878 kb on - strand, within LU632_RS03640at 730.878 kb on - strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.958 kb on + strand, within LU632_RS03640at 730.959 kb on - strand, within LU632_RS03640at 730.977 kb on + strand, within LU632_RS03640at 731.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA
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728,446 + LU632_RS03625 0.80 -1.1
728,446 + LU632_RS03625 0.80 -0.2
728,446 + LU632_RS03625 0.80 +0.5
728,447 - LU632_RS03625 0.80 +0.4
728,447 - LU632_RS03625 0.80 +0.6
728,447 - LU632_RS03625 0.80 +2.1
728,470 - LU632_RS03625 0.87 +1.6
728,512 + +0.4
728,719 - LU632_RS03630 0.22 -1.4
729,030 + LU632_RS03630 0.56 -0.7
729,090 + LU632_RS03630 0.63 -0.7
729,247 + LU632_RS03630 0.80 +0.9
729,369 + -0.2
729,397 + -1.2
729,404 + -1.2
729,405 - +0.0
729,408 + -1.4
729,409 - +0.9
729,803 + LU632_RS03635 0.63 -1.1
729,804 - LU632_RS03635 0.63 -2.5
729,896 + LU632_RS03635 0.78 -1.2
729,897 - LU632_RS03635 0.78 -0.5
729,897 - LU632_RS03635 0.78 +0.5
729,915 - LU632_RS03635 0.81 -1.2
729,977 + +0.6
729,978 - -0.0
730,273 - LU632_RS03640 0.23 +0.3
730,322 + LU632_RS03640 0.28 -0.4
730,322 + LU632_RS03640 0.28 +0.0
730,322 + LU632_RS03640 0.28 -0.4
730,323 - LU632_RS03640 0.28 +0.0
730,355 - LU632_RS03640 0.31 -0.1
730,355 - LU632_RS03640 0.31 -0.7
730,355 - LU632_RS03640 0.31 -0.4
730,355 - LU632_RS03640 0.31 +0.1
730,355 - LU632_RS03640 0.31 -1.5
730,355 - LU632_RS03640 0.31 +1.6
730,355 - LU632_RS03640 0.31 +0.6
730,356 + LU632_RS03640 0.31 +0.3
730,477 + LU632_RS03640 0.42 -0.2
730,511 - LU632_RS03640 0.46 +0.8
730,582 - LU632_RS03640 0.52 -0.3
730,584 - LU632_RS03640 0.53 -0.2
730,587 + LU632_RS03640 0.53 +1.2
730,587 + LU632_RS03640 0.53 -0.1
730,587 + LU632_RS03640 0.53 +0.3
730,587 + LU632_RS03640 0.53 -0.7
730,588 - LU632_RS03640 0.53 -1.0
730,588 - LU632_RS03640 0.53 +0.3
730,592 - LU632_RS03640 0.53 +0.2
730,592 - LU632_RS03640 0.53 -0.5
730,592 - LU632_RS03640 0.53 -1.7
730,592 - LU632_RS03640 0.53 -0.9
730,684 + LU632_RS03640 0.62 -0.3
730,822 - LU632_RS03640 0.75 +0.3
730,854 + LU632_RS03640 0.78 -0.1
730,854 + LU632_RS03640 0.78 +1.5
730,855 - LU632_RS03640 0.78 -1.1
730,857 + LU632_RS03640 0.78 -0.1
730,858 - LU632_RS03640 0.78 +1.6
730,877 + LU632_RS03640 0.80 +0.7
730,877 + LU632_RS03640 0.80 +1.4
730,878 - LU632_RS03640 0.80 -0.2
730,878 - LU632_RS03640 0.80 +0.7
730,947 + LU632_RS03640 0.87 -0.5
730,947 + LU632_RS03640 0.87 +0.6
730,947 + LU632_RS03640 0.87 -1.8
730,947 + LU632_RS03640 0.87 +0.5
730,958 + LU632_RS03640 0.88 +2.9
730,959 - LU632_RS03640 0.88 -0.1
730,977 + LU632_RS03640 0.90 +1.6
731,026 - +1.4

Or see this region's nucleotide sequence