Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03615 and LU632_RS03620 are separated by 68 nucleotides LU632_RS03620 and LU632_RS03625 overlap by 4 nucleotides LU632_RS03625 and LU632_RS03630 are separated by 6 nucleotides LU632_RS03630 and LU632_RS03635 overlap by 8 nucleotides
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514
_RS03625
LU632_RS03630: LU632_RS03630 - baseplate assembly protein, at 728,521 to 729,429
_RS03630
LU632_RS03635: LU632_RS03635 - phage tail protein I, at 729,422 to 730,030
_RS03635
Position (kb) 728
729 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615 at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.869 kb on - strand, within LU632_RS03620 at 727.893 kb on + strand, within LU632_RS03620 at 728.101 kb on + strand, within LU632_RS03620 at 728.229 kb on + strand, within LU632_RS03625 at 728.230 kb on - strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.323 kb on - strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.407 kb on + strand, within LU632_RS03625 at 728.407 kb on - strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.454 kb on + strand, within LU632_RS03625 at 728.470 kb on - strand, within LU632_RS03625 at 728.512 kb on + strand at 728.719 kb on - strand, within LU632_RS03630 at 729.030 kb on + strand, within LU632_RS03630 at 729.090 kb on + strand, within LU632_RS03630 at 729.247 kb on + strand, within LU632_RS03630 at 729.369 kb on + strand at 729.397 kb on + strand at 729.404 kb on + strand at 729.405 kb on - strand at 729.408 kb on + strand at 729.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 727,260 - LU632_RS03615 0.54 -1.2 727,400 - LU632_RS03615 0.85 -1.0 727,468 + -0.4 727,468 + +0.8 727,469 - +3.6 727,534 + -0.5 727,540 + -0.7 727,541 - -1.6 727,541 - +0.4 727,541 - -0.8 727,541 - +1.2 727,541 - +2.5 727,546 - +0.3 727,660 + LU632_RS03620 0.20 -0.4 727,660 + LU632_RS03620 0.20 -0.7 727,660 + LU632_RS03620 0.20 -1.2 727,660 + LU632_RS03620 0.20 +0.0 727,869 - LU632_RS03620 0.53 -0.7 727,893 + LU632_RS03620 0.56 -0.7 728,101 + LU632_RS03620 0.89 +0.3 728,229 + LU632_RS03625 0.18 +0.6 728,230 - LU632_RS03625 0.18 +0.0 728,322 + LU632_RS03625 0.45 +1.2 728,322 + LU632_RS03625 0.45 +1.3 728,323 - LU632_RS03625 0.45 -0.4 728,406 + LU632_RS03625 0.69 -2.3 728,406 + LU632_RS03625 0.69 -0.3 728,406 + LU632_RS03625 0.69 -1.9 728,406 + LU632_RS03625 0.69 -0.5 728,407 + LU632_RS03625 0.69 +0.6 728,407 - LU632_RS03625 0.69 +1.0 728,446 + LU632_RS03625 0.80 -1.1 728,446 + LU632_RS03625 0.80 -0.2 728,446 + LU632_RS03625 0.80 +0.5 728,447 - LU632_RS03625 0.80 +0.4 728,447 - LU632_RS03625 0.80 +0.6 728,447 - LU632_RS03625 0.80 +2.1 728,454 + LU632_RS03625 0.82 +1.6 728,470 - LU632_RS03625 0.87 +1.6 728,512 + +0.4 728,719 - LU632_RS03630 0.22 -1.4 729,030 + LU632_RS03630 0.56 -0.7 729,090 + LU632_RS03630 0.63 -0.7 729,247 + LU632_RS03630 0.80 +0.9 729,369 + -0.2 729,397 + -1.2 729,404 + -1.3 729,405 - +0.0 729,408 + -1.4 729,409 - +0.9
Or see this region's nucleotide sequence