Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03570 and LU632_RS03575 are separated by 4 nucleotides LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.662 kb on - strand, within LU632_RS03570 at 723.682 kb on + strand at 723.698 kb on - strand at 723.972 kb on - strand, within LU632_RS03575 at 724.106 kb on + strand, within LU632_RS03575 at 724.142 kb on + strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580 at 724.944 kb on - strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.983 kb on - strand, within LU632_RS03580 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 723,662 - LU632_RS03570 0.89 +0.6 723,682 + -0.3 723,698 - -1.1 723,972 - LU632_RS03575 0.26 -0.0 724,106 + LU632_RS03575 0.44 +0.8 724,142 + LU632_RS03575 0.48 +1.0 724,143 - LU632_RS03575 0.49 -0.3 724,143 - LU632_RS03575 0.49 +1.1 724,143 - LU632_RS03575 0.49 +0.9 724,447 + LU632_RS03575 0.89 +0.6 724,526 + +1.6 724,609 + +1.1 724,610 - +0.0 724,633 - -1.1 724,707 + LU632_RS03580 0.17 +2.4 724,707 + LU632_RS03580 0.17 +0.0 724,708 + LU632_RS03580 0.17 -1.0 724,712 - LU632_RS03580 0.18 -2.1 724,717 + LU632_RS03580 0.19 -1.4 724,944 - LU632_RS03580 0.63 -0.4 724,982 + LU632_RS03580 0.71 +0.0 724,982 + LU632_RS03580 0.71 -2.0 724,983 - LU632_RS03580 0.71 +0.6 725,325 - -0.2 725,336 + +0.5 725,424 + LU632_RS03590 0.45 -0.1 725,425 - LU632_RS03590 0.45 +0.9 725,425 - LU632_RS03590 0.45 +0.9 725,905 + LU632_RS03595 0.74 -0.2 725,906 - LU632_RS03595 0.74 +0.0 725,906 - LU632_RS03595 0.74 -1.0 725,906 - LU632_RS03595 0.74 +0.1 725,959 + LU632_RS03595 0.84 -0.2 725,959 + LU632_RS03595 0.84 -0.4 726,043 + +0.4 726,043 + +0.2 726,044 - +0.6 726,110 - lysB LU632_RS03600 0.18 +0.7
Or see this region's nucleotide sequence