Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03565 and LU632_RS03570 are separated by 75 nucleotides LU632_RS03570 and LU632_RS03575 are separated by 4 nucleotides LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides
LU632_RS03565: LU632_RS03565 - GPO family capsid scaffolding protein, at 721,777 to 722,631
_RS03565
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 721.843 kb on - strand at 721.879 kb on + strand, within LU632_RS03565 at 721.880 kb on - strand, within LU632_RS03565 at 722.137 kb on + strand, within LU632_RS03565 at 722.138 kb on - strand, within LU632_RS03565 at 722.188 kb on + strand, within LU632_RS03565 at 722.703 kb on + strand at 722.703 kb on + strand at 722.704 kb on - strand at 722.704 kb on - strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.733 kb on + strand at 722.741 kb on - strand at 723.007 kb on + strand, within LU632_RS03570 at 723.008 kb on - strand, within LU632_RS03570 at 723.025 kb on - strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.048 kb on + strand, within LU632_RS03570 at 723.230 kb on - strand, within LU632_RS03570 at 723.382 kb on + strand, within LU632_RS03570 at 723.421 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.662 kb on - strand, within LU632_RS03570 at 723.682 kb on + strand at 723.698 kb on - strand at 723.972 kb on - strand, within LU632_RS03575 at 724.106 kb on + strand, within LU632_RS03575 at 724.142 kb on + strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 721,843 - -0.5 721,879 + LU632_RS03565 0.12 +1.6 721,880 - LU632_RS03565 0.12 +0.9 722,137 + LU632_RS03565 0.42 +0.9 722,138 - LU632_RS03565 0.42 +3.8 722,188 + LU632_RS03565 0.48 +3.5 722,703 + -0.4 722,703 + -0.2 722,704 - +2.2 722,704 - -0.7 722,706 + -0.9 722,706 + -0.4 722,706 + +0.1 722,706 + -0.2 722,707 - +0.0 722,707 - -0.6 722,707 - +0.5 722,733 + -1.0 722,741 - +1.8 723,007 + LU632_RS03570 0.28 +0.6 723,008 - LU632_RS03570 0.28 -1.4 723,025 - LU632_RS03570 0.30 +3.5 723,041 + LU632_RS03570 0.31 -1.2 723,041 + LU632_RS03570 0.31 +1.4 723,046 + LU632_RS03570 0.32 +0.0 723,046 + LU632_RS03570 0.32 -0.4 723,046 + LU632_RS03570 0.32 +0.9 723,047 - LU632_RS03570 0.32 -0.4 723,047 - LU632_RS03570 0.32 +0.1 723,047 - LU632_RS03570 0.32 -0.4 723,048 + LU632_RS03570 0.32 -0.7 723,230 - LU632_RS03570 0.49 +0.2 723,382 + LU632_RS03570 0.63 -0.7 723,421 - LU632_RS03570 0.67 +0.6 723,440 - LU632_RS03570 0.69 -0.7 723,440 - LU632_RS03570 0.69 -0.1 723,440 - LU632_RS03570 0.69 +1.6 723,545 - LU632_RS03570 0.78 +0.5 723,545 - LU632_RS03570 0.78 -2.0 723,592 - LU632_RS03570 0.83 +1.0 723,592 - LU632_RS03570 0.83 +1.8 723,662 - LU632_RS03570 0.89 +0.6 723,682 + -0.3 723,698 - -1.1 723,972 - LU632_RS03575 0.26 -0.0 724,106 + LU632_RS03575 0.44 +0.8 724,142 + LU632_RS03575 0.48 +1.0 724,143 - LU632_RS03575 0.49 -0.3 724,143 - LU632_RS03575 0.49 +1.1 724,143 - LU632_RS03575 0.49 +0.9 724,447 + LU632_RS03575 0.89 +0.6 724,526 + +1.6 724,609 + +1.1 724,610 - +0.0 724,633 - -1.1 724,707 + LU632_RS03580 0.17 +2.4 724,707 + LU632_RS03580 0.17 +0.0 724,708 + LU632_RS03580 0.17 -1.0 724,712 - LU632_RS03580 0.18 -2.1 724,717 + LU632_RS03580 0.19 -1.4
Or see this region's nucleotide sequence