Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03330 and LU632_RS03335 are separated by 467 nucleotides LU632_RS03335 and LU632_RS03340 are separated by 1 nucleotides
LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060
_RS03330
LU632_RS03335: LU632_RS03335 - ABC transporter ATP-binding protein, at 683,528 to 684,571
_RS03335
LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069
_RS03340
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 682.729 kb on - strand, within LU632_RS03330 at 682.729 kb on - strand, within LU632_RS03330 at 682.839 kb on + strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.841 kb on + strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.905 kb on + strand, within LU632_RS03330 at 682.906 kb on - strand, within LU632_RS03330 at 682.925 kb on + strand, within LU632_RS03330 at 683.029 kb on + strand at 683.057 kb on - strand at 683.057 kb on - strand at 683.071 kb on + strand at 683.071 kb on + strand at 683.071 kb on + strand at 683.076 kb on + strand at 683.126 kb on + strand at 683.127 kb on - strand at 683.156 kb on + strand at 683.156 kb on + strand at 683.207 kb on + strand at 683.207 kb on + strand at 683.307 kb on - strand at 683.307 kb on - strand at 683.350 kb on + strand at 683.350 kb on + strand at 683.384 kb on + strand at 683.385 kb on - strand at 683.385 kb on - strand at 683.385 kb on - strand at 683.418 kb on + strand at 683.425 kb on + strand at 683.426 kb on - strand at 683.454 kb on + strand at 683.455 kb on - strand at 683.540 kb on - strand at 683.709 kb on - strand, within LU632_RS03335 at 683.738 kb on + strand, within LU632_RS03335 at 683.876 kb on - strand, within LU632_RS03335 at 684.196 kb on - strand, within LU632_RS03335 at 684.367 kb on + strand, within LU632_RS03335 at 684.547 kb on + strand at 684.571 kb on + strand at 684.571 kb on + strand at 684.572 kb on - strand at 684.572 kb on - strand at 684.574 kb on + strand at 684.574 kb on + strand at 684.575 kb on - strand at 684.653 kb on - strand at 684.946 kb on + strand, within LU632_RS03340 at 685.176 kb on + strand, within LU632_RS03340 at 685.446 kb on - strand, within LU632_RS03340 at 685.534 kb on + strand, within LU632_RS03340
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 682,729 - LU632_RS03330 0.67 +2.4 682,729 - LU632_RS03330 0.67 +2.5 682,839 + LU632_RS03330 0.78 +2.2 682,840 - LU632_RS03330 0.78 +2.9 682,840 - LU632_RS03330 0.78 +0.6 682,840 - LU632_RS03330 0.78 +3.2 682,841 + LU632_RS03330 0.78 +2.2 682,842 - LU632_RS03330 0.78 +3.7 682,842 - LU632_RS03330 0.78 +3.9 682,899 + LU632_RS03330 0.84 +1.8 682,899 + LU632_RS03330 0.84 +0.3 682,900 - LU632_RS03330 0.84 +2.4 682,900 - LU632_RS03330 0.84 +3.4 682,900 - LU632_RS03330 0.84 +3.1 682,900 - LU632_RS03330 0.84 +0.4 682,900 - LU632_RS03330 0.84 +0.0 682,905 + LU632_RS03330 0.85 +2.0 682,906 - LU632_RS03330 0.85 +5.0 682,925 + LU632_RS03330 0.87 +0.0 683,029 + +0.6 683,057 - +1.3 683,057 - +2.1 683,071 + -0.4 683,071 + +0.3 683,071 + +0.8 683,076 + +0.0 683,126 + -2.7 683,127 - -1.5 683,156 + +0.7 683,156 + +0.5 683,207 + -3.2 683,207 + +1.1 683,307 - +0.2 683,307 - -0.8 683,350 + +0.1 683,350 + +0.9 683,384 + -0.9 683,385 - +0.2 683,385 - +0.4 683,385 - +0.3 683,418 + +0.6 683,425 + +1.8 683,426 - +0.1 683,454 + -0.5 683,455 - +0.7 683,540 - +1.0 683,709 - LU632_RS03335 0.17 +0.6 683,738 + LU632_RS03335 0.20 +0.3 683,876 - LU632_RS03335 0.33 -1.5 684,196 - LU632_RS03335 0.64 -1.4 684,367 + LU632_RS03335 0.80 +0.4 684,547 + -0.1 684,571 + +0.7 684,571 + -0.7 684,572 - -1.3 684,572 - +0.6 684,574 + -2.0 684,574 + -0.1 684,575 - -0.5 684,653 - -2.4 684,946 + LU632_RS03340 0.25 +0.1 685,176 + LU632_RS03340 0.40 -1.1 685,446 - LU632_RS03340 0.58 +3.0 685,534 + LU632_RS03340 0.64 +0.5
Or see this region's nucleotide sequence