Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
Position (kb) 509
510 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 508.023 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.044 kb on + strand, within nadR at 508.152 kb on + strand, within nadR at 508.174 kb on - strand, within nadR at 508.286 kb on - strand, within nadR at 508.287 kb on + strand, within nadR at 508.384 kb on - strand, within nadR at 508.420 kb on + strand, within nadR at 508.506 kb on - strand, within nadR at 508.507 kb on - strand, within nadR at 508.524 kb on + strand, within nadR at 508.525 kb on - strand, within nadR at 508.527 kb on + strand, within nadR at 508.547 kb on + strand, within nadR at 508.559 kb on - strand, within nadR at 508.601 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.926 kb on + strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand at 510.103 kb on + strand, within ettA at 510.185 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.200 kb on - strand, within ettA at 510.407 kb on - strand, within ettA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 508,023 + nadR LU632_RS02555 0.21 +0.8 508,023 + nadR LU632_RS02555 0.21 -1.8 508,044 + nadR LU632_RS02555 0.23 -0.6 508,152 + nadR LU632_RS02555 0.32 +0.0 508,174 - nadR LU632_RS02555 0.34 -1.0 508,286 - nadR LU632_RS02555 0.43 +0.1 508,287 + nadR LU632_RS02555 0.43 +0.7 508,384 - nadR LU632_RS02555 0.51 -1.8 508,420 + nadR LU632_RS02555 0.54 +0.6 508,506 - nadR LU632_RS02555 0.61 -1.9 508,507 - nadR LU632_RS02555 0.61 -0.6 508,524 + nadR LU632_RS02555 0.62 -1.0 508,525 - nadR LU632_RS02555 0.62 -0.6 508,527 + nadR LU632_RS02555 0.63 -1.3 508,547 + nadR LU632_RS02555 0.64 +1.3 508,559 - nadR LU632_RS02555 0.65 -1.2 508,601 - nadR LU632_RS02555 0.69 -2.5 508,681 - nadR LU632_RS02555 0.75 +0.2 508,681 - nadR LU632_RS02555 0.75 -1.6 508,800 + nadR LU632_RS02555 0.85 -1.3 508,800 + nadR LU632_RS02555 0.85 -2.1 508,800 + nadR LU632_RS02555 0.85 -0.6 508,843 - nadR LU632_RS02555 0.88 +0.4 508,854 + nadR LU632_RS02555 0.89 -0.0 508,897 - +0.9 508,926 + +0.1 508,930 + +0.2 508,930 + +1.6 508,930 - -0.2 508,931 - -1.5 509,196 + LU632_RS02560 0.46 +1.0 509,197 - LU632_RS02560 0.47 -1.5 509,248 - LU632_RS02560 0.59 +0.7 509,314 - LU632_RS02560 0.76 -0.1 509,363 + LU632_RS02560 0.88 +1.1 509,365 + LU632_RS02560 0.88 +0.0 509,443 + -0.7 509,443 + +1.2 509,443 + -0.3 509,444 - +1.0 509,485 + -1.0 509,533 + +2.8 509,537 + -0.2 509,537 + -2.4 509,537 + +0.3 509,637 + -0.4 509,638 - +0.6 509,660 + +1.0 509,660 + -2.0 509,661 - +0.6 509,676 - -1.1 509,731 - +0.0 509,731 - +1.3 509,753 - -1.1 509,753 - +0.9 509,755 + -0.3 509,756 - +1.2 509,798 - -0.9 509,867 - +2.3 509,879 - -0.6 510,103 + ettA LU632_RS02565 0.22 +0.1 510,185 + ettA LU632_RS02565 0.27 -1.8 510,199 + ettA LU632_RS02565 0.28 -0.3 510,199 + ettA LU632_RS02565 0.28 +0.1 510,200 - ettA LU632_RS02565 0.28 -0.3 510,407 - ettA LU632_RS02565 0.41 +0.4
Or see this region's nucleotide sequence