Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01845 and LU632_RS01850 are separated by 115 nucleotides LU632_RS01850 and aspA are separated by 4 nucleotides aspA and LU632_RS01860 are separated by 347 nucleotides
LU632_RS01845: LU632_RS01845 - anaerobic C4-dicarboxylate transporter, at 355,557 to 356,858
_RS01845
LU632_RS01850: LU632_RS01850 - hypothetical protein, at 356,974 to 357,117
_RS01850
LU632_RS01855: aspA - aspartate ammonia-lyase, at 357,122 to 357,357
aspA
LU632_RS01860: LU632_RS01860 - FxsA family protein, at 357,705 to 358,160
_RS01860
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 356.042 kb on + strand, within LU632_RS01845 at 356.043 kb on - strand, within LU632_RS01845 at 356.070 kb on + strand, within LU632_RS01845 at 356.070 kb on + strand, within LU632_RS01845 at 356.071 kb on - strand, within LU632_RS01845 at 356.091 kb on + strand, within LU632_RS01845 at 356.521 kb on - strand, within LU632_RS01845 at 356.521 kb on - strand, within LU632_RS01845 at 356.567 kb on + strand, within LU632_RS01845 at 356.567 kb on + strand, within LU632_RS01845 at 356.568 kb on - strand, within LU632_RS01845 at 356.568 kb on - strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.569 kb on + strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.570 kb on - strand, within LU632_RS01845 at 356.573 kb on + strand, within LU632_RS01845 at 356.700 kb on - strand, within LU632_RS01845 at 356.736 kb on + strand at 356.841 kb on + strand at 356.841 kb on + strand at 356.842 kb on - strand at 356.842 kb on - strand at 356.842 kb on - strand at 356.902 kb on - strand at 356.962 kb on + strand at 356.963 kb on - strand at 357.040 kb on + strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.041 kb on - strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.042 kb on + strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.043 kb on - strand, within LU632_RS01850 at 357.118 kb on + strand at 357.118 kb on + strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.119 kb on - strand at 357.121 kb on - strand at 357.121 kb on - strand at 357.121 kb on - strand at 357.140 kb on - strand at 357.229 kb on + strand, within aspA at 357.242 kb on - strand, within aspA at 357.280 kb on + strand, within aspA at 357.281 kb on - strand, within aspA at 357.291 kb on + strand, within aspA at 357.295 kb on - strand, within aspA at 357.295 kb on - strand, within aspA at 357.467 kb on - strand at 357.485 kb on + strand at 357.486 kb on - strand at 357.508 kb on + strand at 357.531 kb on - strand at 357.531 kb on - strand at 357.564 kb on - strand at 357.566 kb on + strand at 357.566 kb on + strand at 357.635 kb on - strand at 357.722 kb on + strand at 357.781 kb on + strand, within LU632_RS01860 at 357.781 kb on + strand, within LU632_RS01860 at 357.782 kb on - strand, within LU632_RS01860 at 357.806 kb on - strand, within LU632_RS01860 at 357.874 kb on + strand, within LU632_RS01860 at 357.875 kb on - strand, within LU632_RS01860 at 357.938 kb on - strand, within LU632_RS01860 at 358.000 kb on + strand, within LU632_RS01860 at 358.000 kb on + strand, within LU632_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 356,042 + LU632_RS01845 0.37 +2.7 356,043 - LU632_RS01845 0.37 -2.2 356,070 + LU632_RS01845 0.39 +0.3 356,070 + LU632_RS01845 0.39 +1.7 356,071 - LU632_RS01845 0.39 -1.6 356,091 + LU632_RS01845 0.41 -0.9 356,521 - LU632_RS01845 0.74 +1.0 356,521 - LU632_RS01845 0.74 -0.6 356,567 + LU632_RS01845 0.78 -0.6 356,567 + LU632_RS01845 0.78 -0.7 356,568 - LU632_RS01845 0.78 -1.3 356,568 - LU632_RS01845 0.78 -0.3 356,569 + LU632_RS01845 0.78 -1.3 356,569 + LU632_RS01845 0.78 -1.0 356,569 + LU632_RS01845 0.78 +0.4 356,569 + LU632_RS01845 0.78 -1.2 356,569 + LU632_RS01845 0.78 -0.6 356,569 + LU632_RS01845 0.78 +0.7 356,569 + LU632_RS01845 0.78 -0.9 356,570 - LU632_RS01845 0.78 -0.5 356,570 - LU632_RS01845 0.78 +0.0 356,570 - LU632_RS01845 0.78 -1.5 356,570 - LU632_RS01845 0.78 +0.7 356,570 - LU632_RS01845 0.78 -0.2 356,570 - LU632_RS01845 0.78 -0.1 356,570 - LU632_RS01845 0.78 -0.1 356,570 - LU632_RS01845 0.78 +3.6 356,573 + LU632_RS01845 0.78 -0.1 356,700 - LU632_RS01845 0.88 +0.9 356,736 + +0.3 356,841 + -0.8 356,841 + +0.8 356,842 - -0.7 356,842 - +1.5 356,842 - +2.5 356,902 - -0.8 356,962 + +0.7 356,963 - +0.6 357,040 + LU632_RS01850 0.46 +0.2 357,041 - LU632_RS01850 0.47 +0.2 357,041 - LU632_RS01850 0.47 -2.1 357,041 - LU632_RS01850 0.47 -0.4 357,041 - LU632_RS01850 0.47 +1.4 357,041 - LU632_RS01850 0.47 +0.8 357,042 + LU632_RS01850 0.47 +0.5 357,042 + LU632_RS01850 0.47 -1.6 357,042 + LU632_RS01850 0.47 +0.8 357,042 + LU632_RS01850 0.47 -2.0 357,042 + LU632_RS01850 0.47 -0.3 357,042 + LU632_RS01850 0.47 -1.0 357,043 - LU632_RS01850 0.48 +0.4 357,043 - LU632_RS01850 0.48 +0.3 357,043 - LU632_RS01850 0.48 +0.6 357,118 + -1.3 357,118 + +0.7 357,119 - +0.1 357,119 - -0.3 357,119 - -0.0 357,119 - -0.3 357,119 - -0.1 357,119 - -0.1 357,121 - -0.5 357,121 - -0.2 357,121 - +0.7 357,140 - +0.5 357,229 + aspA LU632_RS01855 0.45 +2.3 357,242 - aspA LU632_RS01855 0.51 -1.0 357,280 + aspA LU632_RS01855 0.67 +2.1 357,281 - aspA LU632_RS01855 0.67 -1.5 357,291 + aspA LU632_RS01855 0.72 +0.3 357,295 - aspA LU632_RS01855 0.73 -0.5 357,295 - aspA LU632_RS01855 0.73 -0.5 357,467 - +0.7 357,485 + +1.3 357,486 - -2.8 357,508 + -0.9 357,531 - +1.3 357,531 - -1.5 357,564 - -0.5 357,566 + -0.0 357,566 + -0.4 357,635 - +1.5 357,722 + -1.3 357,781 + LU632_RS01860 0.17 -0.1 357,781 + LU632_RS01860 0.17 +0.2 357,782 - LU632_RS01860 0.17 -0.5 357,806 - LU632_RS01860 0.22 -1.9 357,874 + LU632_RS01860 0.37 -1.5 357,875 - LU632_RS01860 0.37 -0.3 357,938 - LU632_RS01860 0.51 -1.4 358,000 + LU632_RS01860 0.65 -0.6 358,000 + LU632_RS01860 0.65 -1.3
Or see this region's nucleotide sequence