Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01595 and gpM are separated by 45 nucleotides gpM and LU632_RS01605 are separated by 96 nucleotides LU632_RS01605 and LU632_RS01610 overlap by 1 nucleotides LU632_RS01610 and LU632_RS01615 overlap by 10 nucleotides
LU632_RS01595: LU632_RS01595 - phage major capsid protein, P2 family, at 319,621 to 320,670
_RS01595
LU632_RS01600: gpM - phage terminase small subunit, at 320,716 to 321,573
gpM
LU632_RS01605: LU632_RS01605 - head completion/stabilization protein, at 321,670 to 322,194
_RS01605
LU632_RS01610: LU632_RS01610 - tail protein X, at 322,194 to 322,394
_RS01610
LU632_RS01615: LU632_RS01615 - hypothetical protein, at 322,385 to 322,687
_RS01615
Position (kb) 320
321
322 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 319.918 kb on + strand, within LU632_RS01595 at 319.918 kb on + strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.983 kb on + strand, within LU632_RS01595 at 320.071 kb on + strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.202 kb on + strand, within LU632_RS01595 at 320.203 kb on - strand, within LU632_RS01595 at 320.292 kb on + strand, within LU632_RS01595 at 320.427 kb on - strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.465 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.507 kb on - strand, within LU632_RS01595 at 320.509 kb on + strand, within LU632_RS01595 at 320.510 kb on - strand, within LU632_RS01595 at 320.720 kb on + strand at 320.833 kb on - strand, within gpM at 321.005 kb on - strand, within gpM at 321.031 kb on + strand, within gpM at 321.031 kb on + strand, within gpM at 321.032 kb on - strand, within gpM at 321.207 kb on + strand, within gpM at 321.207 kb on + strand, within gpM at 321.208 kb on - strand, within gpM at 321.208 kb on - strand, within gpM at 321.610 kb on + strand at 321.665 kb on + strand at 321.690 kb on + strand at 321.690 kb on + strand at 321.691 kb on - strand at 321.935 kb on + strand, within LU632_RS01605 at 321.935 kb on + strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 322.282 kb on + strand, within LU632_RS01610 at 322.283 kb on - strand, within LU632_RS01610 at 322.378 kb on + strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 319,918 + LU632_RS01595 0.28 -0.4 319,918 + LU632_RS01595 0.28 -0.3 319,919 - LU632_RS01595 0.28 -3.9 319,919 - LU632_RS01595 0.28 +0.3 319,919 - LU632_RS01595 0.28 +0.3 319,939 + LU632_RS01595 0.30 -0.2 319,939 + LU632_RS01595 0.30 +0.1 319,940 - LU632_RS01595 0.30 -0.6 319,940 - LU632_RS01595 0.30 -2.4 319,983 + LU632_RS01595 0.34 -1.0 320,071 + LU632_RS01595 0.43 -0.3 320,072 - LU632_RS01595 0.43 +1.0 320,072 - LU632_RS01595 0.43 +0.4 320,202 + LU632_RS01595 0.55 -0.9 320,203 - LU632_RS01595 0.55 -0.3 320,292 + LU632_RS01595 0.64 -0.9 320,427 - LU632_RS01595 0.77 -1.4 320,455 + LU632_RS01595 0.79 -0.7 320,455 + LU632_RS01595 0.79 -0.3 320,465 + LU632_RS01595 0.80 +0.1 320,506 + LU632_RS01595 0.84 -1.6 320,506 + LU632_RS01595 0.84 +0.9 320,507 - LU632_RS01595 0.84 +0.0 320,509 + LU632_RS01595 0.85 +0.1 320,510 - LU632_RS01595 0.85 -0.5 320,720 + -0.8 320,833 - gpM LU632_RS01600 0.14 +0.7 321,005 - gpM LU632_RS01600 0.34 -1.1 321,031 + gpM LU632_RS01600 0.37 -0.1 321,031 + gpM LU632_RS01600 0.37 -2.1 321,032 - gpM LU632_RS01600 0.37 -1.9 321,207 + gpM LU632_RS01600 0.57 +1.5 321,207 + gpM LU632_RS01600 0.57 -0.9 321,208 - gpM LU632_RS01600 0.57 -1.1 321,208 - gpM LU632_RS01600 0.57 +1.7 321,610 + -1.3 321,665 + +0.4 321,690 + +0.2 321,690 + +0.4 321,691 - -0.1 321,935 + LU632_RS01605 0.50 +0.7 321,935 + LU632_RS01605 0.50 -0.1 321,936 - LU632_RS01605 0.51 -1.5 321,936 - LU632_RS01605 0.51 +0.7 321,936 - LU632_RS01605 0.51 +0.9 321,936 - LU632_RS01605 0.51 +1.2 322,282 + LU632_RS01610 0.44 -1.2 322,283 - LU632_RS01610 0.44 -0.6 322,378 + -0.6 322,379 - +1.1 322,379 - -1.4 322,379 - -1.4
Or see this region's nucleotide sequence