Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnK and LU632_RS01125 are separated by 74 nucleotides LU632_RS01125 and LU632_RS01130 are separated by 130 nucleotides LU632_RS01130 and lpcA are separated by 213 nucleotides lpcA and LU632_RS01140 are separated by 43 nucleotides
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
LU632_RS01125: LU632_RS01125 - IS5/IS1182 family transposase, at 240,107 to 240,743
_RS01125
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
LU632_RS01135: lpcA - D-sedoheptulose 7-phosphate isomerase, at 241,854 to 242,432
lpcA
LU632_RS01140: LU632_RS01140 - class II glutamine amidotransferase, at 242,476 to 243,243
_RS01140
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 239.894 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.984 kb on + strand at 239.985 kb on - strand at 240.084 kb on - strand at 240.084 kb on - strand at 240.119 kb on - strand at 240.841 kb on - strand at 240.841 kb on - strand at 240.989 kb on + strand, within LU632_RS01130 at 241.077 kb on + strand, within LU632_RS01130 at 241.078 kb on - strand, within LU632_RS01130 at 241.185 kb on - strand, within LU632_RS01130 at 241.303 kb on - strand, within LU632_RS01130 at 241.573 kb on - strand at 241.589 kb on - strand at 241.640 kb on + strand at 241.641 kb on - strand at 241.641 kb on - strand at 241.720 kb on + strand at 241.753 kb on - strand at 242.163 kb on + strand, within lpcA at 242.379 kb on - strand at 242.430 kb on + strand at 242.469 kb on + strand at 242.469 kb on + strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.476 kb on - strand at 242.622 kb on + strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 239,894 + mtnK LU632_RS01120 0.88 +0.1 239,896 + mtnK LU632_RS01120 0.88 +0.9 239,896 + mtnK LU632_RS01120 0.88 +0.4 239,896 + mtnK LU632_RS01120 0.88 -1.1 239,897 - mtnK LU632_RS01120 0.89 -1.7 239,897 - mtnK LU632_RS01120 0.89 +0.2 239,897 - mtnK LU632_RS01120 0.89 +0.1 239,984 + +1.7 239,985 - -0.9 240,084 - -0.1 240,084 - -0.8 240,119 - -0.1 240,841 - +0.9 240,841 - -1.9 240,989 + LU632_RS01130 0.15 +1.0 241,077 + LU632_RS01130 0.26 +0.3 241,078 - LU632_RS01130 0.27 -0.7 241,185 - LU632_RS01130 0.41 +0.9 241,303 - LU632_RS01130 0.56 +0.8 241,573 - -1.6 241,589 - -0.5 241,640 + +0.3 241,641 - -0.6 241,641 - +0.5 241,720 + +1.4 241,753 - -0.6 242,163 + lpcA LU632_RS01135 0.53 +1.7 242,379 - -0.3 242,430 + +0.8 242,469 + -0.3 242,469 + +0.7 242,470 - -0.6 242,470 - -0.1 242,470 - +4.0 242,476 - +2.5 242,622 + LU632_RS01140 0.19 +1.1 242,623 - LU632_RS01140 0.19 +3.0 242,623 - LU632_RS01140 0.19 +0.3 242,623 - LU632_RS01140 0.19 -1.5 242,623 - LU632_RS01140 0.19 +1.7
Or see this region's nucleotide sequence