Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00825 and LU632_RS00830 overlap by 4 nucleotides LU632_RS00830 and LU632_RS00835 are separated by 193 nucleotides
LU632_RS00825: LU632_RS00825 - ROK family protein, at 179,731 to 180,672
_RS00825
LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694
_RS00830
LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664
_RS00835
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 179.718 kb on + strand at 179.718 kb on + strand at 179.719 kb on - strand at 179.719 kb on - strand at 179.719 kb on - strand at 179.722 kb on + strand at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.911 kb on + strand, within LU632_RS00825 at 179.921 kb on - strand, within LU632_RS00825 at 179.934 kb on - strand, within LU632_RS00825 at 179.934 kb on - strand, within LU632_RS00825 at 179.949 kb on + strand, within LU632_RS00825 at 179.950 kb on - strand, within LU632_RS00825 at 179.989 kb on + strand, within LU632_RS00825 at 180.068 kb on - strand, within LU632_RS00825 at 180.310 kb on + strand, within LU632_RS00825 at 180.310 kb on + strand, within LU632_RS00825 at 180.311 kb on - strand, within LU632_RS00825 at 180.672 kb on + strand at 180.673 kb on - strand at 180.697 kb on + strand at 180.698 kb on - strand at 180.767 kb on + strand at 180.767 kb on + strand at 180.774 kb on + strand, within LU632_RS00830 at 180.774 kb on + strand, within LU632_RS00830 at 180.775 kb on - strand, within LU632_RS00830 at 180.829 kb on + strand, within LU632_RS00830 at 180.829 kb on + strand, within LU632_RS00830 at 180.830 kb on - strand, within LU632_RS00830 at 180.830 kb on - strand, within LU632_RS00830 at 181.069 kb on - strand, within LU632_RS00830 at 181.137 kb on + strand, within LU632_RS00830 at 181.140 kb on - strand, within LU632_RS00830 at 181.143 kb on - strand, within LU632_RS00830 at 181.183 kb on + strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.185 kb on + strand, within LU632_RS00830 at 181.186 kb on - strand, within LU632_RS00830 at 181.225 kb on + strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.241 kb on + strand, within LU632_RS00830 at 181.334 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.563 kb on + strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.617 kb on - strand at 181.617 kb on - strand at 181.618 kb on + strand at 181.618 kb on + strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.824 kb on + strand at 181.844 kb on + strand at 181.955 kb on + strand at 181.956 kb on - strand at 182.012 kb on + strand, within LU632_RS00835 at 182.054 kb on + strand, within LU632_RS00835 at 182.055 kb on - strand, within LU632_RS00835 at 182.081 kb on - strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.116 kb on - strand, within LU632_RS00835 at 182.250 kb on - strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.367 kb on + strand, within LU632_RS00835 at 182.417 kb on + strand, within LU632_RS00835 at 182.448 kb on + strand, within LU632_RS00835 at 182.493 kb on + strand, within LU632_RS00835 at 182.565 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.617 kb on + strand at 182.692 kb on + strand at 182.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 179,718 + -0.1 179,718 + +0.8 179,719 - -0.6 179,719 - +0.9 179,719 - +1.7 179,722 + -0.6 179,911 + LU632_RS00825 0.19 +1.4 179,911 + LU632_RS00825 0.19 -0.5 179,911 + LU632_RS00825 0.19 -1.1 179,911 + LU632_RS00825 0.19 -0.6 179,911 + LU632_RS00825 0.19 -0.7 179,921 - LU632_RS00825 0.20 -0.6 179,934 - LU632_RS00825 0.22 +2.1 179,934 - LU632_RS00825 0.22 -2.6 179,949 + LU632_RS00825 0.23 +0.2 179,950 - LU632_RS00825 0.23 -0.1 179,989 + LU632_RS00825 0.27 -0.3 180,068 - LU632_RS00825 0.36 -0.9 180,310 + LU632_RS00825 0.61 -0.8 180,310 + LU632_RS00825 0.61 +1.3 180,311 - LU632_RS00825 0.62 -1.3 180,672 + -1.5 180,673 - +0.1 180,697 + +3.6 180,698 - -0.3 180,767 + +0.8 180,767 + -1.9 180,774 + LU632_RS00830 0.10 -0.6 180,774 + LU632_RS00830 0.10 -0.5 180,775 - LU632_RS00830 0.10 +0.3 180,829 + LU632_RS00830 0.16 +1.1 180,829 + LU632_RS00830 0.16 +1.8 180,830 - LU632_RS00830 0.16 +0.0 180,830 - LU632_RS00830 0.16 +0.2 181,069 - LU632_RS00830 0.39 -0.5 181,137 + LU632_RS00830 0.46 -0.6 181,140 - LU632_RS00830 0.46 -0.5 181,143 - LU632_RS00830 0.46 -1.3 181,183 + LU632_RS00830 0.50 -1.1 181,184 - LU632_RS00830 0.50 -1.2 181,184 - LU632_RS00830 0.50 +0.5 181,184 - LU632_RS00830 0.50 -0.9 181,184 - LU632_RS00830 0.50 +0.5 181,185 + LU632_RS00830 0.50 -0.3 181,186 - LU632_RS00830 0.50 +0.1 181,225 + LU632_RS00830 0.54 +0.5 181,226 - LU632_RS00830 0.54 +1.1 181,226 - LU632_RS00830 0.54 -0.5 181,241 + LU632_RS00830 0.56 +3.7 181,334 + LU632_RS00830 0.65 +0.1 181,370 + LU632_RS00830 0.68 -1.5 181,370 + LU632_RS00830 0.68 +0.4 181,495 - LU632_RS00830 0.81 +1.3 181,495 - LU632_RS00830 0.81 -0.7 181,563 + LU632_RS00830 0.87 +0.6 181,564 - LU632_RS00830 0.87 -0.5 181,564 - LU632_RS00830 0.87 +3.0 181,617 - -2.3 181,617 - -0.9 181,618 + -2.2 181,618 + +0.4 181,619 - +1.3 181,619 - -0.9 181,619 - -1.5 181,619 - -0.3 181,824 + +0.1 181,844 + +1.0 181,955 + -0.1 181,956 - +1.9 182,012 + LU632_RS00835 0.16 +2.1 182,054 + LU632_RS00835 0.21 +3.7 182,055 - LU632_RS00835 0.21 +2.4 182,081 - LU632_RS00835 0.25 +0.1 182,095 + LU632_RS00835 0.27 +2.8 182,095 + LU632_RS00835 0.27 +2.9 182,095 + LU632_RS00835 0.27 +1.1 182,096 - LU632_RS00835 0.27 +3.3 182,096 - LU632_RS00835 0.27 -0.9 182,116 - LU632_RS00835 0.29 +2.9 182,250 - LU632_RS00835 0.47 +1.2 182,322 + LU632_RS00835 0.56 +0.1 182,322 + LU632_RS00835 0.56 +1.9 182,322 + LU632_RS00835 0.56 +1.4 182,323 - LU632_RS00835 0.56 -0.1 182,323 - LU632_RS00835 0.56 +2.6 182,323 - LU632_RS00835 0.56 +4.9 182,323 - LU632_RS00835 0.56 +2.5 182,339 - LU632_RS00835 0.58 +4.0 182,339 - LU632_RS00835 0.58 +2.6 182,339 - LU632_RS00835 0.58 +2.1 182,367 + LU632_RS00835 0.62 +3.1 182,417 + LU632_RS00835 0.68 +1.7 182,448 + LU632_RS00835 0.72 +5.2 182,493 + LU632_RS00835 0.78 +5.3 182,565 + LU632_RS00835 0.87 -0.1 182,577 + LU632_RS00835 0.89 +7.5 182,577 + LU632_RS00835 0.89 +0.4 182,617 + +1.4 182,692 + -0.4 182,692 + -1.2
Or see this region's nucleotide sequence