Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00675

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
138,188	+		LU632_RS00670	0.24	+0.3
138,280	+		LU632_RS00670	0.33	-0.2
138,371	+		LU632_RS00670	0.41	-0.3
138,371	+		LU632_RS00670	0.41	+0.8
138,372	-		LU632_RS00670	0.41	-1.0
138,393	+		LU632_RS00670	0.43	+0.4
138,579	-		LU632_RS00670	0.61	+0.1
138,677	+		LU632_RS00670	0.70	-0.7
138,758	-		LU632_RS00670	0.78	+1.7
138,883	+		LU632_RS00670	0.89	+2.3
138,884	-		LU632_RS00670	0.90	+0.1
138,884	-		LU632_RS00670	0.90	-0.3
138,884	-		LU632_RS00670	0.90	+0.5
138,900	+				+0.5
138,960	+				+1.0
138,960	+				+0.2
138,961	-				+2.9
138,977	+				+0.1
138,978	-				+0.3
139,082	-				-1.1
139,301	+	tssG	LU632_RS00675	0.22	+0.2
139,301	+	tssG	LU632_RS00675	0.22	+0.1
139,302	-	tssG	LU632_RS00675	0.22	+0.6
139,357	+	tssG	LU632_RS00675	0.28	-0.3
139,357	+	tssG	LU632_RS00675	0.28	+0.3
139,358	-	tssG	LU632_RS00675	0.28	-0.7
139,358	-	tssG	LU632_RS00675	0.28	+0.1
139,358	-	tssG	LU632_RS00675	0.28	+1.5
139,403	+	tssG	LU632_RS00675	0.32	+1.8
139,404	-	tssG	LU632_RS00675	0.32	-2.1
139,407	+	tssG	LU632_RS00675	0.33	-1.9
139,408	-	tssG	LU632_RS00675	0.33	-2.7
139,463	+	tssG	LU632_RS00675	0.38	-0.8
139,464	-	tssG	LU632_RS00675	0.38	+1.2
139,494	-	tssG	LU632_RS00675	0.41	-1.5
139,497	-	tssG	LU632_RS00675	0.41	+0.5
139,497	-	tssG	LU632_RS00675	0.41	+0.7
139,585	-	tssG	LU632_RS00675	0.50	+0.3
139,594	+	tssG	LU632_RS00675	0.51	-0.3
139,595	-	tssG	LU632_RS00675	0.51	-1.3
139,631	+	tssG	LU632_RS00675	0.54	-1.1
139,688	+	tssG	LU632_RS00675	0.60	-0.6
139,689	-	tssG	LU632_RS00675	0.60	+0.6
139,689	-	tssG	LU632_RS00675	0.60	+1.3
139,778	+	tssG	LU632_RS00675	0.69	-1.3
139,779	-	tssG	LU632_RS00675	0.69	-0.3
139,840	+	tssG	LU632_RS00675	0.75	+0.1
139,840	+	tssG	LU632_RS00675	0.75	-0.9
139,840	+	tssG	LU632_RS00675	0.75	-1.1
139,847	-	tssG	LU632_RS00675	0.76	+0.1
139,954	+	tssG	LU632_RS00675	0.86	+1.1
139,955	-	tssG	LU632_RS00675	0.86	+0.4
140,011	-				+1.7
140,181	+				+0.2
140,182	-				-0.5
140,182	-				-0.6
140,205	+				+0.5
140,209	+				+1.1
140,209	+				+0.1
140,210	-				+3.5
140,210	-				+0.1
140,233	-				-0.9
140,233	-				-0.9
140,279	+				-1.9
140,279	+				-0.1
140,280	-				+0.5
140,470	+	tssF	LU632_RS00680	0.20	-0.8
140,470	+	tssF	LU632_RS00680	0.20	-0.3
140,546	+	tssF	LU632_RS00680	0.24	+0.7
140,546	+	tssF	LU632_RS00680	0.24	-1.1
140,547	-	tssF	LU632_RS00680	0.24	+0.6
140,547	-	tssF	LU632_RS00680	0.24	-0.4
140,550	+	tssF	LU632_RS00680	0.24	-1.8
140,552	+	tssF	LU632_RS00680	0.24	+0.2
140,552	+	tssF	LU632_RS00680	0.24	-1.6
140,553	-	tssF	LU632_RS00680	0.24	-1.1
140,553	-	tssF	LU632_RS00680	0.24	+1.1
140,553	-	tssF	LU632_RS00680	0.24	-0.6
140,553	-	tssF	LU632_RS00680	0.24	+1.2
140,599	+	tssF	LU632_RS00680	0.27	+2.0
140,600	-	tssF	LU632_RS00680	0.27	-1.3
140,600	-	tssF	LU632_RS00680	0.27	+0.4
140,600	-	tssF	LU632_RS00680	0.27	-1.8
140,603	+	tssF	LU632_RS00680	0.27	-2.2
140,735	-	tssF	LU632_RS00680	0.34	-1.4
140,898	-	tssF	LU632_RS00680	0.43	-0.8
140,972	+	tssF	LU632_RS00680	0.47	-2.6