Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00660 and LU632_RS00665 are separated by 22 nucleotides LU632_RS00665 and LU632_RS00670 are separated by 5 nucleotides
LU632_RS00660: LU632_RS00660 - UDP-N-acetylglucosamine-transferase, at 135,563 to 136,903
_RS00660
LU632_RS00665: LU632_RS00665 - fimbrial protein, at 136,926 to 137,927
_RS00665
LU632_RS00670: LU632_RS00670 - type VI secretion system ImpA family N-terminal domain-containing protein, at 137,933 to 138,994
_RS00670
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.083 kb on - strand, within LU632_RS00660 at 136.194 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.646 kb on - strand, within LU632_RS00660 at 136.778 kb on - strand at 136.790 kb on - strand at 137.073 kb on - strand, within LU632_RS00665 at 137.109 kb on - strand, within LU632_RS00665 at 137.219 kb on - strand, within LU632_RS00665 at 137.243 kb on + strand, within LU632_RS00665 at 137.376 kb on + strand, within LU632_RS00665 at 137.417 kb on - strand, within LU632_RS00665 at 137.435 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.440 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.652 kb on + strand, within LU632_RS00665 at 137.772 kb on - strand, within LU632_RS00665 at 137.805 kb on - strand, within LU632_RS00665 at 137.840 kb on + strand at 137.840 kb on + strand at 137.913 kb on - strand at 137.927 kb on + strand at 137.927 kb on + strand at 137.931 kb on + strand at 137.932 kb on - strand at 137.975 kb on + strand at 138.188 kb on + strand, within LU632_RS00670 at 138.280 kb on + strand, within LU632_RS00670 at 138.371 kb on + strand, within LU632_RS00670 at 138.371 kb on + strand, within LU632_RS00670 at 138.372 kb on - strand, within LU632_RS00670 at 138.393 kb on + strand, within LU632_RS00670 at 138.579 kb on - strand, within LU632_RS00670 at 138.677 kb on + strand, within LU632_RS00670 at 138.758 kb on - strand, within LU632_RS00670 at 138.883 kb on + strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 136,083 - LU632_RS00660 0.39 +0.5 136,194 - LU632_RS00660 0.47 +0.7 136,196 - LU632_RS00660 0.47 -0.6 136,196 - LU632_RS00660 0.47 -1.0 136,646 - LU632_RS00660 0.81 -0.4 136,778 - -0.1 136,790 - -0.2 137,073 - LU632_RS00665 0.15 +0.1 137,109 - LU632_RS00665 0.18 +0.2 137,219 - LU632_RS00665 0.29 +0.3 137,243 + LU632_RS00665 0.32 +0.6 137,376 + LU632_RS00665 0.45 -1.7 137,417 - LU632_RS00665 0.49 -0.4 137,435 + LU632_RS00665 0.51 -0.4 137,439 + LU632_RS00665 0.51 -1.8 137,439 + LU632_RS00665 0.51 -2.2 137,439 + LU632_RS00665 0.51 -0.7 137,440 - LU632_RS00665 0.51 +0.9 137,651 - LU632_RS00665 0.72 -1.8 137,651 - LU632_RS00665 0.72 -0.5 137,652 + LU632_RS00665 0.72 +1.1 137,772 - LU632_RS00665 0.84 -0.8 137,805 - LU632_RS00665 0.88 -0.8 137,840 + -0.4 137,840 + -0.9 137,913 - +1.1 137,927 + +2.0 137,927 + -0.8 137,931 + -1.8 137,932 - -1.1 137,975 + -0.9 138,188 + LU632_RS00670 0.24 +0.3 138,280 + LU632_RS00670 0.33 -0.2 138,371 + LU632_RS00670 0.41 -0.3 138,371 + LU632_RS00670 0.41 +0.8 138,372 - LU632_RS00670 0.41 -1.0 138,393 + LU632_RS00670 0.43 +0.4 138,579 - LU632_RS00670 0.61 +0.1 138,677 + LU632_RS00670 0.70 -0.7 138,758 - LU632_RS00670 0.78 +1.7 138,883 + LU632_RS00670 0.89 +2.3 138,884 - LU632_RS00670 0.90 +0.1 138,884 - LU632_RS00670 0.90 -0.3 138,884 - LU632_RS00670 0.90 +0.5 138,900 + +0.5
Or see this region's nucleotide sequence