Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00390 and LU632_RS00395 are separated by 274 nucleotides LU632_RS00395 and LU632_RS00400 are separated by 479 nucleotides
LU632_RS00390: LU632_RS00390 - sugar kinase, at 81,004 to 81,936
_RS00390
LU632_RS00395: LU632_RS00395 - AsmA family protein, at 82,211 to 84,226
_RS00395
LU632_RS00400: LU632_RS00400 - hypothetical protein, at 84,706 to 85,437
_RS00400
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 81.384 kb on - strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.545 kb on + strand, within LU632_RS00390 at 81.546 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.558 kb on + strand, within LU632_RS00390 at 81.559 kb on - strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.671 kb on + strand, within LU632_RS00390 at 81.674 kb on - strand, within LU632_RS00390 at 81.688 kb on - strand, within LU632_RS00390 at 81.900 kb on + strand at 81.900 kb on + strand at 81.921 kb on + strand at 81.978 kb on + strand at 82.148 kb on + strand at 82.225 kb on - strand at 82.225 kb on - strand at 82.260 kb on + strand at 82.261 kb on - strand at 82.261 kb on - strand at 82.416 kb on + strand, within LU632_RS00395 at 82.471 kb on - strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.519 kb on - strand, within LU632_RS00395 at 82.581 kb on + strand, within LU632_RS00395 at 82.582 kb on - strand, within LU632_RS00395 at 82.594 kb on - strand, within LU632_RS00395 at 82.659 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.683 kb on + strand, within LU632_RS00395 at 82.684 kb on - strand, within LU632_RS00395 at 83.025 kb on + strand, within LU632_RS00395 at 83.026 kb on - strand, within LU632_RS00395 at 83.041 kb on + strand, within LU632_RS00395 at 83.056 kb on - strand, within LU632_RS00395 at 83.060 kb on + strand, within LU632_RS00395 at 83.061 kb on - strand, within LU632_RS00395 at 83.061 kb on - strand, within LU632_RS00395 at 83.080 kb on + strand, within LU632_RS00395 at 83.141 kb on - strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.176 kb on - strand, within LU632_RS00395 at 83.176 kb on - strand, within LU632_RS00395 at 83.249 kb on + strand, within LU632_RS00395 at 83.250 kb on - strand, within LU632_RS00395 at 83.386 kb on - strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.474 kb on + strand, within LU632_RS00395 at 83.475 kb on - strand, within LU632_RS00395 at 83.501 kb on + strand, within LU632_RS00395 at 83.502 kb on - strand, within LU632_RS00395 at 83.502 kb on - strand, within LU632_RS00395 at 83.547 kb on + strand, within LU632_RS00395 at 83.571 kb on + strand, within LU632_RS00395 at 83.718 kb on - strand, within LU632_RS00395 at 83.815 kb on - strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.880 kb on - strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.942 kb on + strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.946 kb on - strand, within LU632_RS00395 at 83.957 kb on + strand, within LU632_RS00395 at 84.013 kb on + strand, within LU632_RS00395 at 84.016 kb on + strand, within LU632_RS00395 at 84.017 kb on - strand, within LU632_RS00395 at 84.038 kb on + strand at 84.038 kb on + strand at 84.039 kb on - strand at 84.172 kb on + strand at 84.174 kb on - strand at 84.256 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand at 84.311 kb on - strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.328 kb on - strand at 84.487 kb on + strand at 84.494 kb on + strand at 84.495 kb on - strand at 84.531 kb on - strand at 84.556 kb on + strand at 84.603 kb on + strand at 84.605 kb on + strand at 84.680 kb on - strand at 84.900 kb on + strand, within LU632_RS00400
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 81,384 - LU632_RS00390 0.41 +1.3 81,539 + LU632_RS00390 0.57 -0.9 81,539 + LU632_RS00390 0.57 +1.8 81,540 - LU632_RS00390 0.57 +0.3 81,540 - LU632_RS00390 0.57 -0.5 81,540 - LU632_RS00390 0.57 +1.3 81,545 + LU632_RS00390 0.58 -1.5 81,546 - LU632_RS00390 0.58 -1.2 81,552 - LU632_RS00390 0.59 -0.6 81,552 - LU632_RS00390 0.59 -2.1 81,558 + LU632_RS00390 0.59 +0.5 81,559 - LU632_RS00390 0.59 -0.0 81,571 + LU632_RS00390 0.61 -0.4 81,571 + LU632_RS00390 0.61 +2.1 81,671 + LU632_RS00390 0.71 +0.8 81,674 - LU632_RS00390 0.72 -0.3 81,688 - LU632_RS00390 0.73 -0.0 81,900 + +4.3 81,900 + +0.4 81,921 + +4.1 81,978 + -0.9 82,148 + +0.7 82,225 - -0.7 82,225 - -0.1 82,260 + -0.0 82,261 - -1.0 82,261 - -0.0 82,416 + LU632_RS00395 0.10 +0.4 82,471 - LU632_RS00395 0.13 -0.6 82,481 + LU632_RS00395 0.13 +0.7 82,481 + LU632_RS00395 0.13 +0.1 82,514 + LU632_RS00395 0.15 +1.1 82,514 + LU632_RS00395 0.15 -1.9 82,515 - LU632_RS00395 0.15 -1.0 82,515 - LU632_RS00395 0.15 -0.8 82,519 - LU632_RS00395 0.15 -0.3 82,581 + LU632_RS00395 0.18 -0.6 82,582 - LU632_RS00395 0.18 -0.1 82,594 - LU632_RS00395 0.19 -2.2 82,659 + LU632_RS00395 0.22 +0.9 82,662 + LU632_RS00395 0.22 +0.7 82,662 + LU632_RS00395 0.22 +1.5 82,662 + LU632_RS00395 0.22 +1.1 82,683 + LU632_RS00395 0.23 -2.2 82,684 - LU632_RS00395 0.23 +0.7 83,025 + LU632_RS00395 0.40 -0.6 83,026 - LU632_RS00395 0.40 -0.3 83,041 + LU632_RS00395 0.41 -0.9 83,056 - LU632_RS00395 0.42 -0.2 83,060 + LU632_RS00395 0.42 +0.7 83,061 - LU632_RS00395 0.42 -0.8 83,061 - LU632_RS00395 0.42 +3.0 83,080 + LU632_RS00395 0.43 +3.7 83,141 - LU632_RS00395 0.46 +0.9 83,175 + LU632_RS00395 0.48 -0.2 83,175 + LU632_RS00395 0.48 -0.7 83,175 + LU632_RS00395 0.48 -0.6 83,176 - LU632_RS00395 0.48 -0.8 83,176 - LU632_RS00395 0.48 +0.8 83,249 + LU632_RS00395 0.51 +1.2 83,250 - LU632_RS00395 0.52 -0.6 83,386 - LU632_RS00395 0.58 -0.6 83,468 + LU632_RS00395 0.62 +0.6 83,468 + LU632_RS00395 0.62 -1.8 83,468 + LU632_RS00395 0.62 +0.0 83,469 - LU632_RS00395 0.62 +0.1 83,469 - LU632_RS00395 0.62 -1.1 83,469 - LU632_RS00395 0.62 +2.9 83,469 - LU632_RS00395 0.62 +0.2 83,470 + LU632_RS00395 0.62 +0.3 83,470 + LU632_RS00395 0.62 +2.1 83,470 + LU632_RS00395 0.62 +1.3 83,470 + LU632_RS00395 0.62 -0.6 83,471 - LU632_RS00395 0.62 -0.0 83,471 - LU632_RS00395 0.62 +0.1 83,471 - LU632_RS00395 0.62 -1.8 83,471 - LU632_RS00395 0.62 +2.3 83,471 - LU632_RS00395 0.62 +0.1 83,471 - LU632_RS00395 0.62 -1.3 83,471 - LU632_RS00395 0.62 -2.3 83,471 - LU632_RS00395 0.62 -0.1 83,471 - LU632_RS00395 0.62 -1.9 83,471 - LU632_RS00395 0.62 -0.9 83,471 - LU632_RS00395 0.62 +5.3 83,471 - LU632_RS00395 0.62 +0.2 83,474 + LU632_RS00395 0.63 +0.3 83,475 - LU632_RS00395 0.63 +0.7 83,501 + LU632_RS00395 0.64 -2.6 83,502 - LU632_RS00395 0.64 -1.5 83,502 - LU632_RS00395 0.64 +1.7 83,547 + LU632_RS00395 0.66 -0.3 83,571 + LU632_RS00395 0.67 +3.0 83,718 - LU632_RS00395 0.75 -0.0 83,815 - LU632_RS00395 0.80 -0.4 83,859 + LU632_RS00395 0.82 +1.1 83,859 + LU632_RS00395 0.82 -1.5 83,879 + LU632_RS00395 0.83 -0.1 83,879 + LU632_RS00395 0.83 -0.9 83,880 - LU632_RS00395 0.83 -0.1 83,939 + LU632_RS00395 0.86 -0.1 83,939 + LU632_RS00395 0.86 -1.8 83,942 + LU632_RS00395 0.86 +0.4 83,943 - LU632_RS00395 0.86 -0.5 83,943 - LU632_RS00395 0.86 -1.5 83,946 - LU632_RS00395 0.86 +1.0 83,957 + LU632_RS00395 0.87 -2.4 84,013 + LU632_RS00395 0.89 -0.9 84,016 + LU632_RS00395 0.90 -1.8 84,017 - LU632_RS00395 0.90 -1.5 84,038 + +1.8 84,038 + +1.1 84,039 - +2.0 84,172 + -0.5 84,174 - -0.1 84,256 - -0.3 84,310 + -1.6 84,310 + -0.3 84,310 + +0.7 84,310 + -0.1 84,311 - -1.4 84,311 - +1.3 84,327 + -0.2 84,327 + +1.4 84,327 + +0.3 84,328 - -0.3 84,487 + +2.0 84,494 + +0.1 84,495 - +0.8 84,531 - +3.1 84,556 + -0.9 84,603 + -0.2 84,605 + +0.1 84,680 - -0.8 84,900 + LU632_RS00400 0.27 -2.5
Or see this region's nucleotide sequence