Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00290

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
57,684	-		LU632_RS00285	0.25	-0.7
58,085	+		LU632_RS00285	0.64	+0.5
58,085	+		LU632_RS00285	0.64	-0.6
58,094	-		LU632_RS00285	0.65	-1.6
58,148	+		LU632_RS00285	0.71	-0.1
58,148	+		LU632_RS00285	0.71	+1.5
58,148	+		LU632_RS00285	0.71	+0.1
58,149	-		LU632_RS00285	0.71	+1.6
58,149	-		LU632_RS00285	0.71	-1.2
58,149	-		LU632_RS00285	0.71	+0.5
58,149	-		LU632_RS00285	0.71	-0.1
58,327	+		LU632_RS00285	0.88	+0.2
58,388	+				+0.7
58,534	+				-0.3
58,534	+				+1.2
58,535	-				+1.2
58,535	-				-1.2
58,536	+				-1.5
58,553	+				-0.9
59,002	-		LU632_RS00290	0.40	+1.4
59,131	-		LU632_RS00290	0.52	+2.0
59,160	+		LU632_RS00290	0.55	+2.1
59,166	-		LU632_RS00290	0.56	+0.2
59,250	-		LU632_RS00290	0.64	-1.3
59,293	+		LU632_RS00290	0.68	+0.5
59,356	-		LU632_RS00290	0.74	+1.6
59,540	+				-1.6
59,540	+				+0.4
59,563	+				+0.1
59,570	-				+0.0
59,582	-				+1.1
60,380	+				+0.7
60,381	-				-1.8
60,383	+				+0.4
60,383	+				+0.1
60,384	-				-0.1
60,387	+				-0.4
60,405	-				-0.6
60,428	+				+0.4
60,428	+				+1.1
60,428	+				+0.6
60,432	-				-1.1
60,432	-				+0.9
60,470	-				-2.6
60,470	-				-1.0
60,499	-				+1.7
60,519	-				+0.1