Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00255

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
49,087	+	cirA	LU632_RS00250	0.55	+0.1
49,087	+	cirA	LU632_RS00250	0.55	-1.5
49,087	+	cirA	LU632_RS00250	0.55	-0.6
49,087	+	cirA	LU632_RS00250	0.55	-0.7
49,126	-	cirA	LU632_RS00250	0.57	-1.1
49,154	+	cirA	LU632_RS00250	0.58	-1.6
49,355	+	cirA	LU632_RS00250	0.69	-1.1
49,484	-	cirA	LU632_RS00250	0.75	-0.1
49,544	+	cirA	LU632_RS00250	0.78	+0.2
49,552	+	cirA	LU632_RS00250	0.79	-0.8
49,654	+	cirA	LU632_RS00250	0.84	-1.6
49,951	+				-0.2
49,988	-				+0.3
50,019	-				-0.5
50,065	-				+0.7
50,067	-				-1.0
50,067	-				+1.1
50,154	+		LU632_RS00255	0.12	-0.1
50,154	+		LU632_RS00255	0.12	+0.9
50,154	+		LU632_RS00255	0.12	+2.3
50,155	-		LU632_RS00255	0.12	+1.9
50,155	-		LU632_RS00255	0.12	+0.9
50,171	+		LU632_RS00255	0.13	-0.5
50,172	-		LU632_RS00255	0.13	-1.0
50,175	+		LU632_RS00255	0.14	-0.8
50,605	-		LU632_RS00255	0.51	+1.4
50,607	-		LU632_RS00255	0.51	+1.1
50,607	-		LU632_RS00255	0.51	-0.3
50,686	-		LU632_RS00255	0.58	-0.1
50,771	-		LU632_RS00255	0.65	-0.2
50,771	-		LU632_RS00255	0.65	-0.2
50,864	-		LU632_RS00255	0.74	+2.5
50,981	+		LU632_RS00255	0.84	+0.3
51,009	+		LU632_RS00255	0.86	-0.8
51,019	-		LU632_RS00255	0.87	+1.7
51,085	+				+0.0
51,086	-				-0.1
51,098	-				-2.3
51,213	-				+2.2
51,258	+				+0.4
51,259	-				+0.6
51,345	-				-1.5
51,348	+				+0.1
51,355	+				-0.2
51,398	+				+0.1
51,399	-				+1.3
51,416	-				+0.1
51,459	+				+1.3
51,595	+				+2.3
51,653	+				-0.5
51,687	+				-0.5
51,702	-				-0.2
51,762	+				-1.9
51,762	+				+0.0
51,762	+				-0.3
51,762	+				+0.8
51,815	-		LU632_RS00260	0.19	+0.2
51,864	+		LU632_RS00260	0.34	-1.5
51,869	+		LU632_RS00260	0.35	+1.4
51,869	+		LU632_RS00260	0.35	+1.0
51,870	-		LU632_RS00260	0.35	+0.7
51,870	-		LU632_RS00260	0.35	+0.3
51,871	+		LU632_RS00260	0.36	+1.6
51,871	+		LU632_RS00260	0.36	+1.4
51,872	-		LU632_RS00260	0.36	+1.0
51,872	-		LU632_RS00260	0.36	+1.4
51,929	+		LU632_RS00260	0.53	+0.3
51,934	+		LU632_RS00260	0.54	+0.2
51,935	-		LU632_RS00260	0.54	-2.3
51,935	-		LU632_RS00260	0.54	+1.4
51,935	-		LU632_RS00260	0.54	+0.0
52,056	+				-1.6
52,063	-				-1.5
52,162	-				+1.7
52,162	-				-1.1