Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00205

Experiment: plant=Squash; plant sample=QP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00195 and LU632_RS00200 overlap by 13 nucleotidesLU632_RS00200 and LU632_RS00205 are separated by 31 nucleotidesLU632_RS00205 and LU632_RS00210 are separated by 862 nucleotides LU632_RS00195: LU632_RS00195 - acyltransferase, at 38,068 to 39,064 _RS00195 LU632_RS00200: LU632_RS00200 - helix-turn-helix domain-containing protein, at 39,052 to 39,434 _RS00200 LU632_RS00205: LU632_RS00205 - isochorismatase family protein, at 39,466 to 40,002 _RS00205 LU632_RS00210: LU632_RS00210 - hypothetical protein, at 40,865 to 41,110 _RS00210 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 38.608 kb on + strand, within LU632_RS00195at 38.609 kb on - strand, within LU632_RS00195at 38.612 kb on + strand, within LU632_RS00195at 38.613 kb on - strand, within LU632_RS00195at 38.616 kb on - strand, within LU632_RS00195at 38.777 kb on + strand, within LU632_RS00195at 38.777 kb on + strand, within LU632_RS00195at 38.784 kb on - strand, within LU632_RS00195at 38.784 kb on - strand, within LU632_RS00195at 38.886 kb on - strand, within LU632_RS00195at 38.975 kb on - strandat 39.053 kb on + strandat 39.054 kb on - strandat 39.054 kb on - strandat 39.085 kb on - strandat 39.085 kb on - strandat 39.203 kb on + strand, within LU632_RS00200at 39.204 kb on - strand, within LU632_RS00200at 39.204 kb on - strand, within LU632_RS00200at 39.307 kb on - strand, within LU632_RS00200at 39.567 kb on + strand, within LU632_RS00205at 39.567 kb on + strand, within LU632_RS00205at 39.568 kb on - strand, within LU632_RS00205at 39.594 kb on + strand, within LU632_RS00205at 39.747 kb on + strand, within LU632_RS00205at 39.748 kb on - strand, within LU632_RS00205at 39.748 kb on - strand, within LU632_RS00205at 39.749 kb on + strand, within LU632_RS00205at 39.750 kb on - strand, within LU632_RS00205at 39.750 kb on - strand, within LU632_RS00205at 39.750 kb on - strand, within LU632_RS00205at 39.750 kb on - strand, within LU632_RS00205at 39.762 kb on - strand, within LU632_RS00205at 39.762 kb on - strand, within LU632_RS00205at 39.786 kb on + strand, within LU632_RS00205at 39.983 kb on - strandat 40.111 kb on - strandat 40.111 kb on - strandat 40.156 kb on - strandat 40.162 kb on - strandat 40.164 kb on + strandat 40.164 kb on + strandat 40.165 kb on - strandat 40.224 kb on - strandat 40.244 kb on - strandat 40.244 kb on - strandat 40.259 kb on + strandat 40.259 kb on + strandat 40.259 kb on + strandat 40.260 kb on - strandat 40.260 kb on - strandat 40.342 kb on + strandat 40.342 kb on + strandat 40.342 kb on + strandat 40.343 kb on - strandat 40.343 kb on - strandat 40.344 kb on + strandat 40.440 kb on + strandat 40.443 kb on - strandat 40.443 kb on - strandat 40.443 kb on - strandat 40.446 kb on - strandat 40.499 kb on + strandat 40.537 kb on + strandat 40.602 kb on + strandat 40.736 kb on - strandat 40.838 kb on + strandat 40.898 kb on - strand, within LU632_RS00210

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA
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38,608 + LU632_RS00195 0.54 -0.6
38,609 - LU632_RS00195 0.54 -0.6
38,612 + LU632_RS00195 0.55 -0.7
38,613 - LU632_RS00195 0.55 -0.0
38,616 - LU632_RS00195 0.55 -1.9
38,777 + LU632_RS00195 0.71 +0.7
38,777 + LU632_RS00195 0.71 -1.2
38,784 - LU632_RS00195 0.72 -0.6
38,784 - LU632_RS00195 0.72 +0.3
38,886 - LU632_RS00195 0.82 +0.8
38,975 - -0.5
39,053 + -0.8
39,054 - +4.0
39,054 - -1.5
39,085 - -0.9
39,085 - +1.7
39,203 + LU632_RS00200 0.39 +1.1
39,204 - LU632_RS00200 0.40 +0.7
39,204 - LU632_RS00200 0.40 -0.6
39,307 - LU632_RS00200 0.67 -0.3
39,567 + LU632_RS00205 0.19 +0.7
39,567 + LU632_RS00205 0.19 +0.4
39,568 - LU632_RS00205 0.19 +1.2
39,594 + LU632_RS00205 0.24 +0.2
39,747 + LU632_RS00205 0.52 -2.8
39,748 - LU632_RS00205 0.53 -0.7
39,748 - LU632_RS00205 0.53 +0.4
39,749 + LU632_RS00205 0.53 +1.5
39,750 - LU632_RS00205 0.53 +0.8
39,750 - LU632_RS00205 0.53 -1.9
39,750 - LU632_RS00205 0.53 +0.7
39,750 - LU632_RS00205 0.53 -0.5
39,762 - LU632_RS00205 0.55 +1.5
39,762 - LU632_RS00205 0.55 +0.7
39,786 + LU632_RS00205 0.60 +0.4
39,983 - +1.1
40,111 - +0.6
40,111 - -0.3
40,156 - -0.9
40,162 - +0.0
40,164 + +0.3
40,164 + -2.1
40,165 - +0.0
40,224 - -0.3
40,244 - +0.4
40,244 - +0.6
40,259 + +0.3
40,259 + -2.0
40,259 + +2.0
40,260 - -1.6
40,260 - +0.9
40,342 + -0.5
40,342 + -0.6
40,342 + -1.6
40,343 - +2.5
40,343 - -0.9
40,344 + -1.1
40,440 + -0.6
40,443 - +0.7
40,443 - +1.9
40,443 - -0.6
40,446 - -0.6
40,499 + -0.4
40,537 + -1.1
40,602 + +0.2
40,736 - +0.6
40,838 + -1.1
40,898 - LU632_RS00210 0.13 -0.7

Or see this region's nucleotide sequence