Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00015

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,493	+				+0.3
2,496	-				-0.5
2,496	-				+1.3
2,546	-				+1.3
2,611	+				+0.3
2,779	-	recF	LU632_RS00015	0.12	-0.0
2,781	-	recF	LU632_RS00015	0.12	-0.5
2,867	+	recF	LU632_RS00015	0.20	-1.1
2,867	+	recF	LU632_RS00015	0.20	-0.6
2,937	-	recF	LU632_RS00015	0.27	-2.5
3,040	-	recF	LU632_RS00015	0.36	+2.3
3,052	-	recF	LU632_RS00015	0.37	-0.1
3,231	+	recF	LU632_RS00015	0.54	-1.0
3,263	+	recF	LU632_RS00015	0.57	-0.2
3,384	+	recF	LU632_RS00015	0.68	+0.3
3,385	-	recF	LU632_RS00015	0.68	+0.0
3,385	-	recF	LU632_RS00015	0.68	-1.8
3,385	-	recF	LU632_RS00015	0.68	-1.3
3,420	-	recF	LU632_RS00015	0.71	+0.5
3,697	+				-2.1