Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26175

Experiment: plant=Squash; plant sample=QP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26170 and LU632_RS26175 overlap by 20 nucleotidesLU632_RS26175 and LU632_RS26180 are separated by 53 nucleotidesLU632_RS26180 and LU632_RS26185 are separated by 10 nucleotides LU632_RS26170: LU632_RS26170 - recombinase RecT, at 33,477 to 34,505 _RS26170 LU632_RS26175: LU632_RS26175 - hypothetical protein, at 34,486 to 34,728 _RS26175 LU632_RS26180: LU632_RS26180 - hypothetical protein, at 34,782 to 35,027 _RS26180 LU632_RS26185: LU632_RS26185 - hypothetical protein, at 35,038 to 35,343 _RS26185 Position (kb) 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 33.503 kb on + strandat 33.503 kb on + strandat 33.542 kb on + strandat 33.720 kb on + strand, within LU632_RS26170at 33.720 kb on + strand, within LU632_RS26170at 33.721 kb on - strand, within LU632_RS26170at 33.721 kb on - strand, within LU632_RS26170at 33.728 kb on + strand, within LU632_RS26170at 33.728 kb on + strand, within LU632_RS26170at 33.728 kb on + strand, within LU632_RS26170at 33.729 kb on - strand, within LU632_RS26170at 33.729 kb on - strand, within LU632_RS26170at 33.729 kb on - strand, within LU632_RS26170at 33.729 kb on - strand, within LU632_RS26170at 33.749 kb on + strand, within LU632_RS26170at 33.763 kb on - strand, within LU632_RS26170at 33.763 kb on - strand, within LU632_RS26170at 33.842 kb on + strand, within LU632_RS26170at 33.936 kb on + strand, within LU632_RS26170at 33.936 kb on + strand, within LU632_RS26170at 33.937 kb on - strand, within LU632_RS26170at 33.937 kb on - strand, within LU632_RS26170at 33.937 kb on - strand, within LU632_RS26170at 34.047 kb on - strand, within LU632_RS26170at 34.047 kb on - strand, within LU632_RS26170at 34.047 kb on - strand, within LU632_RS26170at 34.091 kb on - strand, within LU632_RS26170at 34.099 kb on + strand, within LU632_RS26170at 34.100 kb on - strand, within LU632_RS26170at 34.100 kb on - strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.102 kb on + strand, within LU632_RS26170at 34.103 kb on - strand, within LU632_RS26170at 34.103 kb on - strand, within LU632_RS26170at 34.103 kb on - strand, within LU632_RS26170at 34.143 kb on + strand, within LU632_RS26170at 34.143 kb on + strand, within LU632_RS26170at 34.143 kb on + strand, within LU632_RS26170at 34.143 kb on + strand, within LU632_RS26170at 34.143 kb on + strand, within LU632_RS26170at 34.144 kb on - strand, within LU632_RS26170at 34.289 kb on + strand, within LU632_RS26170at 34.290 kb on - strand, within LU632_RS26170at 34.290 kb on - strand, within LU632_RS26170at 34.290 kb on - strand, within LU632_RS26170at 34.290 kb on - strand, within LU632_RS26170at 34.325 kb on + strand, within LU632_RS26170at 34.325 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.380 kb on + strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.381 kb on - strand, within LU632_RS26170at 34.403 kb on + strandat 34.403 kb on + strandat 34.403 kb on + strandat 34.404 kb on - strandat 34.404 kb on - strandat 34.404 kb on - strandat 34.404 kb on - strandat 34.407 kb on - strandat 34.407 kb on - strandat 34.591 kb on + strand, within LU632_RS26175at 34.591 kb on + strand, within LU632_RS26175at 34.591 kb on + strand, within LU632_RS26175at 34.591 kb on + strand, within LU632_RS26175at 34.592 kb on - strand, within LU632_RS26175at 34.593 kb on + strand, within LU632_RS26175at 34.593 kb on + strand, within LU632_RS26175at 34.737 kb on + strandat 34.738 kb on - strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.757 kb on + strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.758 kb on - strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.759 kb on + strandat 34.760 kb on + strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.792 kb on + strandat 34.792 kb on + strandat 34.793 kb on - strandat 34.826 kb on - strand, within LU632_RS26180at 34.837 kb on + strand, within LU632_RS26180at 34.838 kb on - strand, within LU632_RS26180at 34.890 kb on - strand, within LU632_RS26180at 34.890 kb on - strand, within LU632_RS26180at 34.890 kb on - strand, within LU632_RS26180at 34.890 kb on - strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.893 kb on + strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.894 kb on - strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.895 kb on + strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.896 kb on - strand, within LU632_RS26180at 34.907 kb on - strand, within LU632_RS26180at 34.910 kb on + strand, within LU632_RS26180at 35.036 kb on + strandat 35.036 kb on + strandat 35.037 kb on - strandat 35.078 kb on + strand, within LU632_RS26185at 35.078 kb on + strand, within LU632_RS26185at 35.079 kb on - strand, within LU632_RS26185at 35.104 kb on + strand, within LU632_RS26185at 35.104 kb on + strand, within LU632_RS26185at 35.104 kb on + strand, within LU632_RS26185at 35.105 kb on - strand, within LU632_RS26185at 35.113 kb on + strand, within LU632_RS26185at 35.113 kb on + strand, within LU632_RS26185at 35.113 kb on + strand, within LU632_RS26185at 35.113 kb on + strand, within LU632_RS26185at 35.114 kb on - strand, within LU632_RS26185at 35.114 kb on - strand, within LU632_RS26185at 35.114 kb on - strand, within LU632_RS26185at 35.114 kb on - strand, within LU632_RS26185at 35.114 kb on - strand, within LU632_RS26185at 35.154 kb on + strand, within LU632_RS26185at 35.155 kb on - strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.172 kb on + strand, within LU632_RS26185at 35.173 kb on - strand, within LU632_RS26185at 35.173 kb on - strand, within LU632_RS26185at 35.200 kb on - strand, within LU632_RS26185at 35.220 kb on + strand, within LU632_RS26185at 35.276 kb on + strand, within LU632_RS26185at 35.276 kb on + strand, within LU632_RS26185at 35.277 kb on - strand, within LU632_RS26185at 35.277 kb on - strand, within LU632_RS26185at 35.296 kb on + strand, within LU632_RS26185at 35.296 kb on + strand, within LU632_RS26185at 35.367 kb on - strandat 35.368 kb on + strandat 35.369 kb on - strandat 35.376 kb on + strandat 35.431 kb on + strandat 35.432 kb on - strandat 35.432 kb on - strandat 35.497 kb on + strandat 35.498 kb on - strandat 35.498 kb on - strandat 35.502 kb on + strandat 35.502 kb on + strandat 35.502 kb on + strandat 35.502 kb on + strandat 35.502 kb on + strandat 35.502 kb on + strandat 35.503 kb on - strandat 35.503 kb on - strandat 35.503 kb on - strandat 35.564 kb on + strandat 35.564 kb on + strandat 35.588 kb on - strandat 35.634 kb on + strandat 35.635 kb on - strandat 35.684 kb on + strandat 35.684 kb on + strandat 35.684 kb on + strandat 35.684 kb on + strandat 35.684 kb on + strandat 35.684 kb on + strandat 35.685 kb on - strandat 35.685 kb on - strandat 35.685 kb on - strandat 35.685 kb on - strandat 35.685 kb on - strandat 35.685 kb on - strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.688 kb on + strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strandat 35.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
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33,503 + -0.8
33,503 + -0.8
33,542 + -2.9
33,720 + LU632_RS26170 0.24 -0.9
33,720 + LU632_RS26170 0.24 +2.2
33,721 - LU632_RS26170 0.24 +0.9
33,721 - LU632_RS26170 0.24 +2.3
33,728 + LU632_RS26170 0.24 +3.6
33,728 + LU632_RS26170 0.24 -0.0
33,728 + LU632_RS26170 0.24 +3.0
33,729 - LU632_RS26170 0.24 -0.5
33,729 - LU632_RS26170 0.24 -3.8
33,729 - LU632_RS26170 0.24 -1.2
33,729 - LU632_RS26170 0.24 -0.6
33,749 + LU632_RS26170 0.26 +1.3
33,763 - LU632_RS26170 0.28 -0.4
33,763 - LU632_RS26170 0.28 -1.2
33,842 + LU632_RS26170 0.35 -1.1
33,936 + LU632_RS26170 0.45 -0.7
33,936 + LU632_RS26170 0.45 -1.5
33,937 - LU632_RS26170 0.45 +3.9
33,937 - LU632_RS26170 0.45 +0.8
33,937 - LU632_RS26170 0.45 +0.2
34,047 - LU632_RS26170 0.55 +0.2
34,047 - LU632_RS26170 0.55 +2.3
34,047 - LU632_RS26170 0.55 +1.9
34,091 - LU632_RS26170 0.60 +0.0
34,099 + LU632_RS26170 0.60 -1.2
34,100 - LU632_RS26170 0.61 -3.3
34,100 - LU632_RS26170 0.61 -0.7
34,102 + LU632_RS26170 0.61 -2.4
34,102 + LU632_RS26170 0.61 -0.4
34,102 + LU632_RS26170 0.61 +1.4
34,102 + LU632_RS26170 0.61 -2.4
34,102 + LU632_RS26170 0.61 -0.1
34,102 + LU632_RS26170 0.61 -0.3
34,102 + LU632_RS26170 0.61 -2.2
34,103 - LU632_RS26170 0.61 +1.0
34,103 - LU632_RS26170 0.61 -1.0
34,103 - LU632_RS26170 0.61 +0.2
34,143 + LU632_RS26170 0.65 -1.1
34,143 + LU632_RS26170 0.65 +0.4
34,143 + LU632_RS26170 0.65 -1.4
34,143 + LU632_RS26170 0.65 +3.1
34,143 + LU632_RS26170 0.65 +4.6
34,144 - LU632_RS26170 0.65 +0.1
34,289 + LU632_RS26170 0.79 -2.4
34,290 - LU632_RS26170 0.79 -0.9
34,290 - LU632_RS26170 0.79 +2.9
34,290 - LU632_RS26170 0.79 -2.9
34,290 - LU632_RS26170 0.79 -2.2
34,325 + LU632_RS26170 0.82 +0.8
34,325 + LU632_RS26170 0.82 +0.9
34,380 + LU632_RS26170 0.88 +1.8
34,380 + LU632_RS26170 0.88 +0.9
34,380 + LU632_RS26170 0.88 -0.7
34,380 + LU632_RS26170 0.88 +0.2
34,380 + LU632_RS26170 0.88 -1.6
34,380 + LU632_RS26170 0.88 +0.5
34,380 + LU632_RS26170 0.88 +0.3
34,380 + LU632_RS26170 0.88 -0.7
34,381 - LU632_RS26170 0.88 -1.1
34,381 - LU632_RS26170 0.88 -3.2
34,381 - LU632_RS26170 0.88 -1.4
34,381 - LU632_RS26170 0.88 -0.1
34,381 - LU632_RS26170 0.88 +1.1
34,381 - LU632_RS26170 0.88 +0.5
34,403 + -1.1
34,403 + -1.4
34,403 + -1.9
34,404 - -2.7
34,404 - +2.1
34,404 - +2.9
34,404 - -0.4
34,407 - +0.2
34,407 - +1.1
34,591 + LU632_RS26175 0.43 -2.2
34,591 + LU632_RS26175 0.43 +1.5
34,591 + LU632_RS26175 0.43 -0.4
34,591 + LU632_RS26175 0.43 -1.5
34,592 - LU632_RS26175 0.44 -2.8
34,593 + LU632_RS26175 0.44 -2.1
34,593 + LU632_RS26175 0.44 +0.5
34,737 + -2.0
34,738 - +0.1
34,757 + +1.5
34,757 + -0.7
34,757 + -1.5
34,757 + +3.3
34,757 + -0.7
34,757 + +0.1
34,757 + -3.5
34,757 + +3.5
34,757 + -2.1
34,757 + -0.8
34,757 + -1.9
34,757 + +3.4
34,758 - -1.4
34,758 - +2.1
34,758 - -0.7
34,758 - -3.1
34,758 - -0.4
34,758 - -0.2
34,758 - -0.1
34,758 - -0.1
34,758 - +0.3
34,758 - +1.6
34,758 - -2.7
34,758 - -2.1
34,758 - +1.8
34,758 - -1.4
34,759 + +1.8
34,759 + +0.8
34,759 + +0.0
34,759 + +2.3
34,759 + -0.0
34,759 + +1.9
34,759 + +0.0
34,759 + -1.7
34,759 + -0.1
34,759 + -0.4
34,759 + -1.1
34,759 + -1.4
34,759 + +0.8
34,759 + -0.9
34,759 + +1.3
34,759 + -1.6
34,759 + -0.5
34,759 + -1.4
34,759 + +1.6
34,759 + -1.1
34,760 + -1.1
34,760 - -0.8
34,760 - +0.8
34,760 - -1.2
34,760 - -2.4
34,760 - +2.3
34,760 - -1.7
34,760 - +1.7
34,760 - +0.0
34,760 - -1.3
34,760 - -1.9
34,760 - -2.0
34,760 - -0.7
34,760 - +0.5
34,760 - -3.7
34,760 - -0.4
34,760 - +2.9
34,760 - +1.3
34,760 - -1.6
34,760 - +0.3
34,760 - -0.2
34,792 + -1.9
34,792 + -1.0
34,793 - -1.3
34,826 - LU632_RS26180 0.18 +1.2
34,837 + LU632_RS26180 0.22 +3.7
34,838 - LU632_RS26180 0.23 +0.1
34,890 - LU632_RS26180 0.44 +2.3
34,890 - LU632_RS26180 0.44 -1.8
34,890 - LU632_RS26180 0.44 +0.8
34,890 - LU632_RS26180 0.44 +0.8
34,893 + LU632_RS26180 0.45 +1.5
34,893 + LU632_RS26180 0.45 -0.1
34,893 + LU632_RS26180 0.45 -1.5
34,893 + LU632_RS26180 0.45 +1.3
34,893 + LU632_RS26180 0.45 -0.4
34,893 + LU632_RS26180 0.45 +1.6
34,893 + LU632_RS26180 0.45 -1.7
34,893 + LU632_RS26180 0.45 +0.2
34,894 - LU632_RS26180 0.46 +2.6
34,894 - LU632_RS26180 0.46 -2.2
34,894 - LU632_RS26180 0.46 -1.4
34,894 - LU632_RS26180 0.46 +0.2
34,894 - LU632_RS26180 0.46 -0.9
34,894 - LU632_RS26180 0.46 +4.8
34,894 - LU632_RS26180 0.46 +0.8
34,895 + LU632_RS26180 0.46 -1.9
34,895 + LU632_RS26180 0.46 +1.5
34,895 + LU632_RS26180 0.46 -0.2
34,895 + LU632_RS26180 0.46 -0.7
34,895 + LU632_RS26180 0.46 -0.4
34,895 + LU632_RS26180 0.46 +1.0
34,895 + LU632_RS26180 0.46 -1.7
34,895 + LU632_RS26180 0.46 -2.4
34,896 - LU632_RS26180 0.46 -1.3
34,896 - LU632_RS26180 0.46 -2.4
34,896 - LU632_RS26180 0.46 +3.2
34,896 - LU632_RS26180 0.46 -3.8
34,896 - LU632_RS26180 0.46 -0.7
34,896 - LU632_RS26180 0.46 -1.3
34,896 - LU632_RS26180 0.46 -0.8
34,907 - LU632_RS26180 0.51 +0.2
34,910 + LU632_RS26180 0.52 -0.5
35,036 + -2.5
35,036 + +0.1
35,037 - -0.4
35,078 + LU632_RS26185 0.13 -1.5
35,078 + LU632_RS26185 0.13 -2.4
35,079 - LU632_RS26185 0.13 -3.1
35,104 + LU632_RS26185 0.22 -1.1
35,104 + LU632_RS26185 0.22 -1.7
35,104 + LU632_RS26185 0.22 +2.0
35,105 - LU632_RS26185 0.22 +0.1
35,113 + LU632_RS26185 0.25 +1.8
35,113 + LU632_RS26185 0.25 -0.2
35,113 + LU632_RS26185 0.25 +0.1
35,113 + LU632_RS26185 0.25 -0.8
35,114 - LU632_RS26185 0.25 -0.4
35,114 - LU632_RS26185 0.25 +0.4
35,114 - LU632_RS26185 0.25 -1.0
35,114 - LU632_RS26185 0.25 +2.5
35,114 - LU632_RS26185 0.25 -1.7
35,154 + LU632_RS26185 0.38 -1.7
35,155 - LU632_RS26185 0.38 -4.0
35,172 + LU632_RS26185 0.44 -0.2
35,172 + LU632_RS26185 0.44 -0.4
35,172 + LU632_RS26185 0.44 +0.9
35,172 + LU632_RS26185 0.44 +0.4
35,172 + LU632_RS26185 0.44 +0.3
35,172 + LU632_RS26185 0.44 -0.5
35,173 - LU632_RS26185 0.44 +0.1
35,173 - LU632_RS26185 0.44 -1.4
35,200 - LU632_RS26185 0.53 +1.8
35,220 + LU632_RS26185 0.59 -2.4
35,276 + LU632_RS26185 0.78 +0.3
35,276 + LU632_RS26185 0.78 -1.9
35,277 - LU632_RS26185 0.78 -2.1
35,277 - LU632_RS26185 0.78 -2.4
35,296 + LU632_RS26185 0.84 -2.2
35,296 + LU632_RS26185 0.84 -2.4
35,367 - -0.1
35,368 + +2.7
35,369 - +1.9
35,376 + +4.4
35,431 + -0.7
35,432 - -0.5
35,432 - +0.5
35,497 + +1.4
35,498 - -3.4
35,498 - +0.5
35,502 + +0.6
35,502 + +0.4
35,502 + +1.0
35,502 + -1.4
35,502 + -1.1
35,502 + +3.1
35,503 - -1.3
35,503 - -3.7
35,503 - -4.4
35,564 + +1.2
35,564 + +0.5
35,588 - -1.7
35,634 + -0.3
35,635 - -2.6
35,684 + -0.7
35,684 + +1.5
35,684 + +0.5
35,684 + +0.2
35,684 + +2.2
35,684 + -0.1
35,685 - +3.9
35,685 - +0.4
35,685 - -0.6
35,685 - -0.1
35,685 - -1.0
35,685 - -1.4
35,688 + -1.4
35,688 + -0.5
35,688 + -1.9
35,688 + +0.9
35,688 + -1.5
35,688 + +1.5
35,688 + +0.9
35,688 + -1.7
35,688 + +4.0
35,689 - -0.7
35,689 - -1.8
35,689 - -1.1
35,689 - -3.1
35,689 - -0.1
35,689 - -3.5
35,689 - -0.2
35,689 - -0.1
35,689 - -0.8

Or see this region's nucleotide sequence