Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 13,511 + LU632_RS26020 0.54 +0.3 14,296 - +1.4 14,309 + -1.7 14,309 + +0.4 14,310 - -1.5 14,320 + +1.2 14,320 + -0.2 14,320 + -0.1 14,320 + +0.1 14,321 - -1.1 14,371 + +1.2 14,371 + +0.8 14,371 + +1.5 14,372 - +0.4 14,372 - -1.1 14,379 + +2.0 14,380 - -2.6 14,412 - LU632_RS26030 0.11 -0.5 14,456 + LU632_RS26030 0.16 +2.4 14,459 + LU632_RS26030 0.16 -1.7 14,460 - LU632_RS26030 0.16 -1.0 14,460 - LU632_RS26030 0.16 +1.1 14,461 + LU632_RS26030 0.16 +2.1 14,502 - LU632_RS26030 0.21 -1.1 14,510 + LU632_RS26030 0.22 -1.3 14,510 + LU632_RS26030 0.22 +0.2 14,561 + LU632_RS26030 0.27 -3.4 14,672 - LU632_RS26030 0.38 -2.4 14,820 - LU632_RS26030 0.54 -1.9 14,842 + LU632_RS26030 0.56 -1.4 14,842 + LU632_RS26030 0.56 +1.5 14,843 - LU632_RS26030 0.56 -0.1 14,843 - LU632_RS26030 0.56 -2.5 14,843 - LU632_RS26030 0.56 +3.4 14,843 - LU632_RS26030 0.56 -1.7 14,869 + LU632_RS26030 0.59 -0.6 14,870 - LU632_RS26030 0.59 -2.0 14,890 + LU632_RS26030 0.61 -1.1 14,890 + LU632_RS26030 0.61 -0.1 14,890 + LU632_RS26030 0.61 -2.4 14,891 - LU632_RS26030 0.61 +1.5 14,905 - LU632_RS26030 0.63 -0.9 14,944 - LU632_RS26030 0.67 +1.4 15,000 - LU632_RS26030 0.73 -0.6 15,035 + LU632_RS26030 0.76 -3.0 15,036 - LU632_RS26030 0.76 -1.1 15,096 - LU632_RS26030 0.83 -1.3 15,105 + LU632_RS26030 0.84 +3.1 15,106 - LU632_RS26030 0.84 -1.8 15,106 - LU632_RS26030 0.84 -0.7 15,119 + LU632_RS26030 0.85 -2.0 15,180 + +0.9 15,180 + -3.6 15,180 + -2.1 15,180 + +0.2 15,180 + -3.1 15,181 - +0.7 15,181 - -1.9 15,181 - -1.1 15,202 - -2.1 15,279 + -1.4 15,279 + -1.2 15,280 - +0.2 15,280 - +1.1 15,288 + -2.0 15,328 + LU632_RS26035 0.10 -0.4 15,328 + LU632_RS26035 0.10 +0.2 15,329 - LU632_RS26035 0.11 -3.8 15,398 - LU632_RS26035 0.25 -0.5 15,416 + LU632_RS26035 0.29 +0.0 15,426 + LU632_RS26035 0.31 -1.4 15,426 + LU632_RS26035 0.31 +0.1 15,427 - LU632_RS26035 0.31 -1.3 15,427 - LU632_RS26035 0.31 -0.6 15,427 - LU632_RS26035 0.31 -3.7 15,475 + LU632_RS26035 0.41 +0.8 15,476 - LU632_RS26035 0.41 -0.7 15,491 + LU632_RS26035 0.44 -2.1 15,491 + LU632_RS26035 0.44 +0.9 15,491 + LU632_RS26035 0.44 -0.2 15,491 + LU632_RS26035 0.44 -1.4 15,491 + LU632_RS26035 0.44 -0.2 15,491 + LU632_RS26035 0.44 -2.5 15,492 - LU632_RS26035 0.44 -1.5 15,492 - LU632_RS26035 0.44 -1.7 15,492 - LU632_RS26035 0.44 -1.2 15,492 - LU632_RS26035 0.44 +0.4 15,492 - LU632_RS26035 0.44 -1.4 15,492 - LU632_RS26035 0.44 -1.9 15,573 + LU632_RS26035 0.61 +0.3 15,573 + LU632_RS26035 0.61 -1.2 15,574 - LU632_RS26035 0.61 -1.1 15,574 - LU632_RS26035 0.61 -0.1 15,574 - LU632_RS26035 0.61 +1.8 15,574 - LU632_RS26035 0.61 -2.2 15,574 - LU632_RS26035 0.61 +1.0 15,645 + LU632_RS26035 0.76 -2.1 15,661 + LU632_RS26035 0.79 +1.0 15,661 + LU632_RS26035 0.79 +0.3 15,661 + LU632_RS26035 0.79 -1.1 15,712 + +3.4 15,712 + +0.3 15,712 + -0.1 15,712 + +0.1 15,713 - -0.4 15,713 - +0.9 15,761 + -0.0 15,761 + +0.1 15,761 + -1.0 15,761 + +0.1 15,761 + +2.9 15,761 + -3.3 15,761 + -0.4 15,762 - +1.0 15,762 - -1.1 15,817 + -0.1 15,899 + -0.8 15,900 - -0.7 16,017 + LU632_RS26040 0.19 -0.1 16,072 + LU632_RS26040 0.23 +1.4 16,072 + LU632_RS26040 0.23 +2.0 16,109 + LU632_RS26040 0.26 +0.9 16,110 - LU632_RS26040 0.26 -0.7 16,110 - LU632_RS26040 0.26 -0.7 16,110 - LU632_RS26040 0.26 -1.2 16,110 - LU632_RS26040 0.26 -0.1 16,153 - LU632_RS26040 0.30 +3.2 16,230 - LU632_RS26040 0.36 -1.9 16,249 + LU632_RS26040 0.37 -1.9
Or see this region's nucleotide sequence