Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25665 and LU632_RS25670 are separated by 44 nucleotides LU632_RS25670 and LU632_RS25675 are separated by 5 nucleotides LU632_RS25675 and LU632_RS25680 are separated by 32 nucleotides LU632_RS25680 and LU632_RS25685 are separated by 110 nucleotides LU632_RS25685 and LU632_RS25690 overlap by 4 nucleotides
LU632_RS25665: LU632_RS25665 - lytic transglycosylase domain-containing protein, at 63,064 to 63,540
_RS25665
LU632_RS25670: LU632_RS25670 - prepilin peptidase, at 63,585 to 64,202
_RS25670
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
LU632_RS25680: LU632_RS25680 - hypothetical protein, at 65,632 to 65,835
_RS25680
LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398
_RS25685
LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183
_RS25690
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 63.212 kb on + strand, within LU632_RS25665 at 63.225 kb on + strand, within LU632_RS25665 at 63.231 kb on + strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.234 kb on + strand, within LU632_RS25665 at 63.252 kb on + strand, within LU632_RS25665 at 63.253 kb on - strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.348 kb on - strand, within LU632_RS25665 at 63.366 kb on + strand, within LU632_RS25665 at 63.367 kb on - strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.444 kb on + strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.502 kb on + strand at 63.502 kb on + strand at 63.503 kb on - strand at 63.511 kb on + strand at 63.512 kb on - strand at 63.521 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.575 kb on - strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.601 kb on + strand at 63.661 kb on + strand, within LU632_RS25670 at 63.661 kb on + strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.699 kb on - strand, within LU632_RS25670 at 63.748 kb on + strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.094 kb on + strand, within LU632_RS25670 at 64.194 kb on - strand at 64.200 kb on + strand at 64.201 kb on - strand at 64.201 kb on - strand at 64.261 kb on - strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.313 kb on + strand at 64.314 kb on - strand at 64.316 kb on - strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.391 kb on + strand, within LU632_RS25675 at 64.391 kb on + strand, within LU632_RS25675 at 64.508 kb on - strand, within LU632_RS25675 at 64.510 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.553 kb on - strand, within LU632_RS25675 at 64.605 kb on + strand, within LU632_RS25675 at 64.606 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.641 kb on + strand, within LU632_RS25675 at 64.722 kb on - strand, within LU632_RS25675 at 64.973 kb on - strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.154 kb on + strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.309 kb on + strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.312 kb on - strand, within LU632_RS25675 at 65.331 kb on + strand, within LU632_RS25675 at 65.332 kb on + strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.345 kb on - strand, within LU632_RS25675 at 65.381 kb on + strand, within LU632_RS25675 at 65.383 kb on + strand, within LU632_RS25675 at 65.384 kb on - strand, within LU632_RS25675 at 65.462 kb on - strand at 65.462 kb on - strand at 65.472 kb on - strand at 65.485 kb on + strand at 65.486 kb on - strand at 65.486 kb on - strand at 65.515 kb on - strand at 65.533 kb on + strand at 65.561 kb on + strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.575 kb on + strand at 65.623 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.734 kb on - strand, within LU632_RS25680 at 65.754 kb on - strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.856 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.897 kb on - strand at 65.897 kb on - strand at 65.928 kb on - strand at 65.959 kb on - strand at 66.014 kb on + strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.018 kb on - strand, within LU632_RS25685 at 66.082 kb on - strand, within LU632_RS25685 at 66.215 kb on + strand, within LU632_RS25685 at 66.225 kb on + strand, within LU632_RS25685 at 66.226 kb on - strand, within LU632_RS25685 at 66.313 kb on + strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.361 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.426 kb on + strand at 66.427 kb on - strand at 66.472 kb on + strand at 66.472 kb on + strand at 66.473 kb on - strand at 66.473 kb on - strand at 66.506 kb on + strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 63,212 + LU632_RS25665 0.31 +0.9 63,225 + LU632_RS25665 0.34 +1.1 63,231 + LU632_RS25665 0.35 -1.6 63,232 - LU632_RS25665 0.35 -1.8 63,232 - LU632_RS25665 0.35 +3.8 63,232 - LU632_RS25665 0.35 -0.9 63,232 - LU632_RS25665 0.35 -1.0 63,234 + LU632_RS25665 0.36 +0.4 63,252 + LU632_RS25665 0.39 -0.5 63,253 - LU632_RS25665 0.40 +1.8 63,347 + LU632_RS25665 0.59 +0.0 63,347 + LU632_RS25665 0.59 +1.1 63,348 - LU632_RS25665 0.60 -0.3 63,366 + LU632_RS25665 0.63 +2.4 63,367 - LU632_RS25665 0.64 +0.4 63,442 + LU632_RS25665 0.79 -3.0 63,442 + LU632_RS25665 0.79 +2.4 63,442 + LU632_RS25665 0.79 -0.6 63,442 + LU632_RS25665 0.79 +0.8 63,442 + LU632_RS25665 0.79 +2.0 63,442 + LU632_RS25665 0.79 -0.1 63,442 + LU632_RS25665 0.79 +1.6 63,442 + LU632_RS25665 0.79 -1.2 63,442 + LU632_RS25665 0.79 -1.2 63,443 - LU632_RS25665 0.79 -0.4 63,443 - LU632_RS25665 0.79 +0.8 63,443 - LU632_RS25665 0.79 -2.2 63,443 - LU632_RS25665 0.79 +0.2 63,443 - LU632_RS25665 0.79 -0.2 63,443 - LU632_RS25665 0.79 +0.2 63,444 + LU632_RS25665 0.80 +0.0 63,445 - LU632_RS25665 0.80 +1.0 63,445 - LU632_RS25665 0.80 +3.6 63,502 + -1.0 63,502 + -1.4 63,503 - -0.6 63,511 + -1.2 63,512 - +0.6 63,521 + +2.7 63,562 + +0.8 63,563 - -0.9 63,575 - -0.2 63,599 + +3.2 63,599 + -1.0 63,599 + -1.1 63,599 + +0.9 63,600 - +2.2 63,600 - +1.7 63,600 - -0.9 63,601 + +0.7 63,661 + LU632_RS25670 0.12 +2.1 63,661 + LU632_RS25670 0.12 +0.8 63,662 - LU632_RS25670 0.12 +0.5 63,662 - LU632_RS25670 0.12 -3.2 63,699 - LU632_RS25670 0.18 -0.2 63,748 + LU632_RS25670 0.26 +0.0 63,925 - LU632_RS25670 0.55 -2.2 63,925 - LU632_RS25670 0.55 -0.8 63,925 - LU632_RS25670 0.55 +0.6 63,996 + LU632_RS25670 0.67 -2.1 63,996 + LU632_RS25670 0.67 +0.3 63,996 + LU632_RS25670 0.67 -0.6 63,997 - LU632_RS25670 0.67 -0.8 63,997 - LU632_RS25670 0.67 +0.3 63,997 - LU632_RS25670 0.67 +1.4 63,997 - LU632_RS25670 0.67 +0.7 64,000 + LU632_RS25670 0.67 -3.5 64,000 + LU632_RS25670 0.67 +0.9 64,000 + LU632_RS25670 0.67 -0.4 64,073 + LU632_RS25670 0.79 -0.7 64,073 + LU632_RS25670 0.79 -3.1 64,074 - LU632_RS25670 0.79 -0.4 64,074 - LU632_RS25670 0.79 +0.6 64,094 + LU632_RS25670 0.82 +0.2 64,194 - -0.6 64,200 + +0.4 64,201 - -0.6 64,201 - +1.9 64,261 - +0.6 64,296 + -0.6 64,296 + -1.1 64,296 + -1.5 64,296 + +0.6 64,296 + +1.1 64,296 + -1.7 64,296 + +0.4 64,296 + +1.8 64,296 + -0.7 64,296 + +0.4 64,296 + +0.4 64,297 - +2.0 64,297 - -2.2 64,297 - +2.8 64,298 + -1.0 64,298 + -0.1 64,298 + -0.3 64,298 + +0.7 64,298 + +0.5 64,298 + -0.6 64,298 + +1.7 64,298 + -1.2 64,298 + -0.4 64,298 + +1.9 64,299 - +0.9 64,299 - -1.5 64,299 - -0.2 64,299 - +1.1 64,299 - +0.9 64,299 - +1.4 64,299 - +1.4 64,299 - -0.1 64,313 + -0.6 64,314 - -1.5 64,316 - -2.7 64,322 + -0.2 64,322 + +1.1 64,322 + -1.5 64,322 + -0.3 64,322 + -2.5 64,322 + -0.6 64,322 + +0.8 64,322 + -2.5 64,322 + +0.4 64,323 - -0.6 64,323 - +1.0 64,323 - -2.7 64,391 + LU632_RS25675 0.13 +0.0 64,391 + LU632_RS25675 0.13 -0.2 64,508 - LU632_RS25675 0.22 -1.6 64,510 + LU632_RS25675 0.22 +2.2 64,552 + LU632_RS25675 0.25 -0.1 64,552 + LU632_RS25675 0.25 +1.5 64,553 - LU632_RS25675 0.25 +0.3 64,605 + LU632_RS25675 0.29 -1.2 64,606 - LU632_RS25675 0.29 -1.0 64,611 - LU632_RS25675 0.29 -1.1 64,611 - LU632_RS25675 0.29 -1.3 64,611 - LU632_RS25675 0.29 -1.8 64,641 + LU632_RS25675 0.31 +1.3 64,722 - LU632_RS25675 0.37 -0.2 64,973 - LU632_RS25675 0.55 +0.8 65,024 + LU632_RS25675 0.59 -1.0 65,024 + LU632_RS25675 0.59 +0.4 65,025 - LU632_RS25675 0.59 +1.7 65,025 - LU632_RS25675 0.59 -2.6 65,027 - LU632_RS25675 0.59 +2.0 65,027 - LU632_RS25675 0.59 -1.0 65,154 + LU632_RS25675 0.68 +0.8 65,155 - LU632_RS25675 0.68 +1.4 65,155 - LU632_RS25675 0.68 -0.4 65,309 + LU632_RS25675 0.79 -0.1 65,310 - LU632_RS25675 0.79 +2.4 65,310 - LU632_RS25675 0.79 +0.8 65,312 - LU632_RS25675 0.79 +0.6 65,331 + LU632_RS25675 0.81 +0.5 65,332 + LU632_RS25675 0.81 -1.0 65,341 - LU632_RS25675 0.81 -1.0 65,341 - LU632_RS25675 0.81 -2.1 65,341 - LU632_RS25675 0.81 +1.4 65,345 - LU632_RS25675 0.82 +2.8 65,381 + LU632_RS25675 0.84 -1.6 65,383 + LU632_RS25675 0.84 -3.3 65,384 - LU632_RS25675 0.84 +0.8 65,462 - -1.2 65,462 - -0.2 65,472 - -1.0 65,485 + +0.4 65,486 - +0.9 65,486 - +3.5 65,515 - -1.8 65,533 + +1.0 65,561 + -1.2 65,562 - -0.6 65,562 - +0.5 65,562 - +0.0 65,575 + +1.7 65,623 + +0.4 65,627 + +0.8 65,627 + +0.2 65,627 + +0.6 65,673 + LU632_RS25680 0.20 -0.7 65,673 + LU632_RS25680 0.20 +0.9 65,673 + LU632_RS25680 0.20 -1.5 65,673 + LU632_RS25680 0.20 -0.3 65,673 + LU632_RS25680 0.20 +0.4 65,673 + LU632_RS25680 0.20 -0.2 65,674 - LU632_RS25680 0.21 +1.5 65,674 - LU632_RS25680 0.21 +0.1 65,674 - LU632_RS25680 0.21 -2.6 65,674 - LU632_RS25680 0.21 +0.6 65,674 - LU632_RS25680 0.21 -0.3 65,729 + LU632_RS25680 0.48 +1.5 65,729 + LU632_RS25680 0.48 -0.6 65,730 - LU632_RS25680 0.48 -2.1 65,730 - LU632_RS25680 0.48 -1.6 65,733 + LU632_RS25680 0.50 -1.6 65,733 + LU632_RS25680 0.50 +0.2 65,734 - LU632_RS25680 0.50 -0.4 65,754 - LU632_RS25680 0.60 +0.1 65,757 + LU632_RS25680 0.61 -2.9 65,757 + LU632_RS25680 0.61 -1.2 65,856 + -0.5 65,896 + -1.0 65,896 + +1.3 65,896 + +1.4 65,896 + +2.2 65,896 + +0.2 65,896 + -0.3 65,896 + -0.2 65,896 + -0.3 65,896 + -1.5 65,896 + +0.8 65,897 - +1.2 65,897 - +0.5 65,928 - -0.1 65,959 - -0.2 66,014 + LU632_RS25685 0.15 -1.0 66,015 - LU632_RS25685 0.15 +0.4 66,015 - LU632_RS25685 0.15 +1.5 66,015 - LU632_RS25685 0.15 -1.9 66,015 - LU632_RS25685 0.15 -2.0 66,018 - LU632_RS25685 0.16 +0.2 66,082 - LU632_RS25685 0.30 -1.8 66,215 + LU632_RS25685 0.59 +1.7 66,225 + LU632_RS25685 0.62 -1.2 66,226 - LU632_RS25685 0.62 -0.3 66,313 + LU632_RS25685 0.81 +1.7 66,314 - LU632_RS25685 0.81 -0.6 66,314 - LU632_RS25685 0.81 -1.5 66,314 - LU632_RS25685 0.81 -2.6 66,314 - LU632_RS25685 0.81 -0.6 66,361 - -1.4 66,409 - -0.1 66,409 - -1.8 66,409 - +0.5 66,409 - +1.5 66,426 + +1.5 66,427 - -0.2 66,472 + -3.0 66,472 + -1.0 66,473 - -0.2 66,473 - -0.9 66,506 + LU632_RS25690 0.14 +1.2 66,507 - LU632_RS25690 0.14 +0.4 66,507 - LU632_RS25690 0.14 -0.1
Or see this region's nucleotide sequence