Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25485

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
29,746	+				-0.2
29,747	-				-2.0
29,747	-				+0.8
29,908	+				+0.2
30,032	+		LU632_RS25480	0.38	-2.7
30,073	-		LU632_RS25480	0.55	+0.7
30,078	+		LU632_RS25480	0.57	-0.6
30,118	-		LU632_RS25480	0.73	+1.7
30,139	+		LU632_RS25480	0.82	-0.7
30,140	-		LU632_RS25480	0.82	-0.2
30,218	+				-1.8
30,218	+				+0.9
30,289	+				-0.7
30,289	+				+0.3
30,359	+				+2.3
30,360	-				-0.0
30,360	-				+0.6
30,360	-				+0.3
30,360	-				-0.7
30,360	-				+3.2
30,360	-				+1.9
30,360	-				+2.1
30,360	-				+0.8
30,360	-				-1.0
30,423	+				+1.8
30,424	-				-0.2
30,431	+				-0.1
30,432	-				+2.1
30,432	-				+0.2
30,445	+				-1.2
30,446	-				-1.0
30,547	+				+0.3
30,547	+				-0.2
30,547	+				-0.8
30,617	+				+0.6
30,618	-				+0.8
30,618	-				-0.7
30,635	-				-0.8
30,652	+				+0.3
30,653	-				+2.0
30,654	+				+0.3
30,654	+				-0.7
30,654	+				+3.7
30,654	+				-0.7
30,654	+				-0.2
30,654	+				-1.0
30,655	-				-0.8
30,655	-				+2.0
30,655	-				+0.7
30,655	-				+0.5
30,655	-				-1.2
30,655	-				+0.0
30,655	-				-1.7
30,824	+		LU632_RS25485	0.55	-3.0
30,824	+		LU632_RS25485	0.55	-2.5
30,824	+		LU632_RS25485	0.55	-0.7
30,826	+		LU632_RS25485	0.56	-0.5
30,826	+		LU632_RS25485	0.56	-2.2
30,869	+		LU632_RS25485	0.86	+1.3
30,883	+				+0.3
30,883	+				-1.0
30,904	+				-1.8
30,904	+				-0.1
30,991	-				+2.2
31,001	+				-0.7
31,017	-		LU632_RS25490	0.12	-1.4
31,017	-		LU632_RS25490	0.12	-0.0
31,017	-		LU632_RS25490	0.12	-1.1
31,053	-		LU632_RS25490	0.18	-0.7
31,096	+		LU632_RS25490	0.26	+1.6
31,097	-		LU632_RS25490	0.26	-0.2
31,097	-		LU632_RS25490	0.26	+0.3
31,097	-		LU632_RS25490	0.26	-1.7
31,151	+		LU632_RS25490	0.35	-0.1
31,152	-		LU632_RS25490	0.36	+0.8
31,175	+		LU632_RS25490	0.40	-2.1
31,199	+		LU632_RS25490	0.44	-0.9
31,199	+		LU632_RS25490	0.44	+0.3
31,230	+		LU632_RS25490	0.49	+1.2
31,230	+		LU632_RS25490	0.49	-2.0
31,230	+		LU632_RS25490	0.49	-0.2
31,230	+		LU632_RS25490	0.49	+1.3
31,230	+		LU632_RS25490	0.49	+2.8
31,230	+		LU632_RS25490	0.49	+2.8
31,230	+		LU632_RS25490	0.49	+0.3
31,230	+		LU632_RS25490	0.49	+0.6
31,230	+		LU632_RS25490	0.49	+1.3
31,230	+		LU632_RS25490	0.49	-0.5
31,231	-		LU632_RS25490	0.49	+1.9
31,231	-		LU632_RS25490	0.49	-0.2
31,231	-		LU632_RS25490	0.49	-0.9
31,295	+		LU632_RS25490	0.60	-1.0
31,295	+		LU632_RS25490	0.60	+0.1
31,295	+		LU632_RS25490	0.60	-1.5
31,296	-		LU632_RS25490	0.60	+0.1
31,354	+		LU632_RS25490	0.70	-0.2
31,834	+				+2.5
31,835	-				-0.2