Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25460 and LU632_RS25465 are separated by 418 nucleotides LU632_RS25465 and LU632_RS25470 are separated by 92 nucleotides LU632_RS25470 and LU632_RS25475 overlap by 35 nucleotides
LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094
_RS25460
LU632_RS25465: LU632_RS25465 - hypothetical protein, at 28,513 to 28,779
_RS25465
LU632_RS25470: LU632_RS25470 - DUF1419 domain-containing protein, at 28,872 to 29,312
_RS25470
LU632_RS25475: LU632_RS25475 - hypothetical protein, at 29,278 to 29,436
_RS25475
Position (kb) 28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 27.513 kb on - strand, within LU632_RS25460 at 27.513 kb on - strand, within LU632_RS25460 at 27.520 kb on + strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.722 kb on + strand, within LU632_RS25460 at 27.764 kb on + strand, within LU632_RS25460 at 27.764 kb on + strand, within LU632_RS25460 at 27.768 kb on - strand, within LU632_RS25460 at 27.792 kb on - strand, within LU632_RS25460 at 27.854 kb on + strand, within LU632_RS25460 at 27.854 kb on + strand, within LU632_RS25460 at 27.941 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.956 kb on - strand, within LU632_RS25460 at 28.077 kb on - strand at 28.077 kb on - strand at 28.083 kb on + strand at 28.083 kb on + strand at 28.084 kb on - strand at 28.116 kb on + strand at 28.116 kb on + strand at 28.117 kb on - strand at 28.117 kb on - strand at 28.484 kb on - strand at 28.511 kb on + strand at 28.653 kb on + strand, within LU632_RS25465 at 28.654 kb on - strand, within LU632_RS25465 at 28.654 kb on - strand, within LU632_RS25465 at 28.784 kb on + strand at 28.785 kb on - strand at 28.785 kb on - strand at 28.785 kb on - strand at 28.898 kb on + strand at 28.919 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.009 kb on - strand, within LU632_RS25470 at 29.009 kb on - strand, within LU632_RS25470 at 29.261 kb on + strand, within LU632_RS25470 at 29.746 kb on + strand at 29.747 kb on - strand at 29.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 27,513 - LU632_RS25460 0.30 +0.6 27,513 - LU632_RS25460 0.30 +1.7 27,520 + LU632_RS25460 0.31 -1.7 27,521 - LU632_RS25460 0.31 -0.6 27,521 - LU632_RS25460 0.31 +4.9 27,521 - LU632_RS25460 0.31 -0.4 27,722 + LU632_RS25460 0.55 +0.4 27,764 + LU632_RS25460 0.60 -0.0 27,764 + LU632_RS25460 0.60 +0.3 27,768 - LU632_RS25460 0.61 -1.8 27,792 - LU632_RS25460 0.64 -0.1 27,854 + LU632_RS25460 0.71 +0.6 27,854 + LU632_RS25460 0.71 +4.2 27,941 + LU632_RS25460 0.82 -0.1 27,955 + LU632_RS25460 0.83 +0.8 27,955 + LU632_RS25460 0.83 +2.0 27,955 + LU632_RS25460 0.83 +0.6 27,956 - LU632_RS25460 0.83 +0.6 28,077 - +2.9 28,077 - +2.0 28,083 + -1.2 28,083 + +0.5 28,084 - +2.5 28,116 + -0.2 28,116 + -1.0 28,117 - +1.3 28,117 - -2.1 28,484 - -0.6 28,511 + +0.3 28,653 + LU632_RS25465 0.52 -0.7 28,654 - LU632_RS25465 0.53 -1.5 28,654 - LU632_RS25465 0.53 -1.8 28,784 + +2.6 28,785 - +0.6 28,785 - +0.5 28,785 - -1.8 28,898 + +0.6 28,919 + LU632_RS25470 0.11 -1.5 29,008 + LU632_RS25470 0.31 -0.4 29,008 + LU632_RS25470 0.31 -0.9 29,008 + LU632_RS25470 0.31 -0.2 29,009 - LU632_RS25470 0.31 +0.1 29,009 - LU632_RS25470 0.31 +0.1 29,261 + LU632_RS25470 0.88 -1.9 29,746 + -0.2 29,747 - -2.0 29,747 - +0.8
Or see this region's nucleotide sequence