Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25435 and LU632_RS25440 are separated by 323 nucleotides LU632_RS25440 and LU632_RS25445 are separated by 14 nucleotides LU632_RS25445 and LU632_RS25450 are separated by 1 nucleotides LU632_RS25450 and LU632_RS25455 are separated by 278 nucleotides
LU632_RS25435: LU632_RS25435 - phospholipase D family protein, at 22,884 to 23,357
_RS25435
LU632_RS25440: LU632_RS25440 - hypothetical protein, at 23,681 to 24,205
_RS25440
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497
_RS25450
LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087
_RS25455
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.314 kb on - strand at 23.328 kb on - strand at 23.335 kb on + strand at 23.336 kb on - strand at 23.355 kb on + strand at 23.407 kb on + strand at 23.412 kb on + strand at 23.412 kb on + strand at 23.413 kb on - strand at 23.442 kb on + strand at 23.443 kb on - strand at 23.599 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.693 kb on - strand at 23.693 kb on - strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.709 kb on - strand at 23.833 kb on + strand, within LU632_RS25440 at 23.863 kb on + strand, within LU632_RS25440 at 23.902 kb on - strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.040 kb on - strand, within LU632_RS25440 at 24.110 kb on - strand, within LU632_RS25440 at 24.160 kb on + strand at 24.161 kb on - strand at 24.198 kb on - strand at 24.208 kb on - strand at 24.261 kb on + strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.265 kb on - strand at 24.265 kb on - strand at 24.311 kb on + strand at 24.386 kb on + strand at 24.397 kb on - strand at 24.414 kb on + strand, within LU632_RS25445 at 24.516 kb on + strand, within LU632_RS25445 at 24.517 kb on - strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.547 kb on - strand, within LU632_RS25445 at 24.560 kb on + strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.648 kb on + strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.919 kb on - strand, within LU632_RS25445 at 24.930 kb on + strand, within LU632_RS25445 at 24.931 kb on - strand, within LU632_RS25445 at 24.932 kb on - strand, within LU632_RS25445 at 25.010 kb on + strand, within LU632_RS25445 at 25.011 kb on - strand, within LU632_RS25445 at 25.020 kb on - strand, within LU632_RS25445 at 25.060 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.188 kb on + strand, within LU632_RS25445 at 25.361 kb on + strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.373 kb on - strand, within LU632_RS25445 at 25.480 kb on - strand, within LU632_RS25445 at 25.558 kb on + strand, within LU632_RS25445 at 25.604 kb on + strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.623 kb on - strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.726 kb on - strand, within LU632_RS25445 at 25.802 kb on + strand, within LU632_RS25445 at 26.087 kb on + strand at 26.115 kb on + strand at 26.195 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.281 kb on - strand, within LU632_RS25450 at 26.395 kb on + strand, within LU632_RS25450 at 26.492 kb on - strand at 26.535 kb on + strand at 26.536 kb on - strand at 26.653 kb on + strand at 26.656 kb on - strand at 26.714 kb on - strand at 26.730 kb on - strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.820 kb on + strand, within LU632_RS25455 at 26.868 kb on + strand, within LU632_RS25455 at 26.869 kb on - strand, within LU632_RS25455 at 27.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 23,238 + LU632_RS25435 0.75 -0.2 23,238 + LU632_RS25435 0.75 -1.2 23,238 + LU632_RS25435 0.75 -0.3 23,238 + LU632_RS25435 0.75 +0.6 23,238 + LU632_RS25435 0.75 +0.4 23,314 - -0.9 23,328 - -1.0 23,335 + -0.2 23,336 - +0.4 23,355 + -1.2 23,407 + -0.6 23,412 + +0.1 23,412 + +0.3 23,413 - +2.4 23,442 + -0.7 23,443 - +0.4 23,599 + -0.1 23,692 + -0.6 23,692 + -0.2 23,692 + -0.0 23,692 + -1.3 23,693 - +0.7 23,693 - +0.1 23,698 + +0.2 23,698 + +0.6 23,698 + -1.5 23,698 + -1.2 23,698 + -2.2 23,698 + +0.7 23,698 + -0.2 23,698 + -0.7 23,699 - -0.1 23,699 - +0.4 23,699 - +2.7 23,699 - -1.0 23,699 - +0.8 23,709 - -0.5 23,833 + LU632_RS25440 0.29 -1.7 23,863 + LU632_RS25440 0.35 +0.6 23,902 - LU632_RS25440 0.42 -1.0 24,031 + LU632_RS25440 0.67 -1.5 24,031 + LU632_RS25440 0.67 +0.0 24,031 + LU632_RS25440 0.67 -1.0 24,031 + LU632_RS25440 0.67 -1.7 24,031 + LU632_RS25440 0.67 +0.2 24,031 + LU632_RS25440 0.67 -0.3 24,031 + LU632_RS25440 0.67 -1.3 24,031 + LU632_RS25440 0.67 +0.1 24,031 + LU632_RS25440 0.67 -0.2 24,031 + LU632_RS25440 0.67 -0.9 24,031 + LU632_RS25440 0.67 -0.6 24,031 + LU632_RS25440 0.67 -1.0 24,031 + LU632_RS25440 0.67 +1.2 24,031 + LU632_RS25440 0.67 -1.5 24,032 - LU632_RS25440 0.67 +0.5 24,032 - LU632_RS25440 0.67 +1.0 24,032 - LU632_RS25440 0.67 +0.8 24,032 - LU632_RS25440 0.67 +0.8 24,032 - LU632_RS25440 0.67 -2.2 24,032 - LU632_RS25440 0.67 +0.2 24,032 - LU632_RS25440 0.67 -1.0 24,032 - LU632_RS25440 0.67 -2.8 24,032 - LU632_RS25440 0.67 -1.2 24,032 - LU632_RS25440 0.67 -0.5 24,032 - LU632_RS25440 0.67 -1.0 24,032 - LU632_RS25440 0.67 -3.5 24,032 - LU632_RS25440 0.67 +0.1 24,032 - LU632_RS25440 0.67 -0.8 24,040 - LU632_RS25440 0.68 -1.2 24,110 - LU632_RS25440 0.82 +0.4 24,160 + -0.7 24,161 - -0.0 24,198 - -0.1 24,208 - +0.4 24,261 + +0.4 24,262 - +0.4 24,262 - -0.6 24,264 + +0.4 24,264 + -0.5 24,264 + +0.8 24,265 - +1.4 24,265 - +0.2 24,311 + -0.1 24,386 + -1.0 24,397 - +1.6 24,414 + LU632_RS25445 0.10 +0.9 24,516 + LU632_RS25445 0.15 +0.4 24,517 - LU632_RS25445 0.15 +0.6 24,518 + LU632_RS25445 0.15 +1.4 24,518 + LU632_RS25445 0.15 -0.8 24,518 + LU632_RS25445 0.15 +0.1 24,518 + LU632_RS25445 0.15 +0.3 24,518 + LU632_RS25445 0.15 -1.3 24,518 + LU632_RS25445 0.15 +0.4 24,518 + LU632_RS25445 0.15 -0.8 24,519 - LU632_RS25445 0.15 +0.8 24,519 - LU632_RS25445 0.15 +1.7 24,547 - LU632_RS25445 0.17 +1.3 24,560 + LU632_RS25445 0.18 -1.1 24,561 - LU632_RS25445 0.18 +3.2 24,561 - LU632_RS25445 0.18 -1.1 24,561 - LU632_RS25445 0.18 -1.1 24,645 + LU632_RS25445 0.22 +0.4 24,645 + LU632_RS25445 0.22 +1.0 24,646 - LU632_RS25445 0.22 -1.3 24,646 - LU632_RS25445 0.22 -0.4 24,648 + LU632_RS25445 0.22 -0.6 24,649 - LU632_RS25445 0.22 -2.9 24,649 - LU632_RS25445 0.22 +0.9 24,918 + LU632_RS25445 0.36 +1.4 24,918 + LU632_RS25445 0.36 +0.4 24,919 - LU632_RS25445 0.36 +0.2 24,930 + LU632_RS25445 0.37 +0.8 24,931 - LU632_RS25445 0.37 -0.5 24,932 - LU632_RS25445 0.37 -3.1 25,010 + LU632_RS25445 0.41 +1.2 25,011 - LU632_RS25445 0.41 -0.9 25,020 - LU632_RS25445 0.41 -1.1 25,060 - LU632_RS25445 0.43 -2.1 25,141 - LU632_RS25445 0.48 -0.6 25,141 - LU632_RS25445 0.48 +4.5 25,188 + LU632_RS25445 0.50 -2.0 25,361 + LU632_RS25445 0.59 -0.2 25,362 - LU632_RS25445 0.59 +0.4 25,362 - LU632_RS25445 0.59 +0.4 25,362 - LU632_RS25445 0.59 -0.1 25,373 - LU632_RS25445 0.60 -0.0 25,480 - LU632_RS25445 0.65 -0.2 25,558 + LU632_RS25445 0.69 -0.5 25,604 + LU632_RS25445 0.72 +0.7 25,605 - LU632_RS25445 0.72 -0.7 25,605 - LU632_RS25445 0.72 -0.6 25,623 - LU632_RS25445 0.73 +0.6 25,697 + LU632_RS25445 0.76 -0.2 25,697 + LU632_RS25445 0.76 +2.5 25,697 + LU632_RS25445 0.76 -0.6 25,697 + LU632_RS25445 0.76 -0.6 25,698 - LU632_RS25445 0.77 +1.8 25,698 - LU632_RS25445 0.77 +2.6 25,726 - LU632_RS25445 0.78 -0.8 25,802 + LU632_RS25445 0.82 +1.4 26,087 + +1.9 26,115 + +0.6 26,195 + LU632_RS25450 0.12 -0.3 26,221 + LU632_RS25450 0.20 +1.4 26,221 + LU632_RS25450 0.20 -0.2 26,281 - LU632_RS25450 0.37 +1.3 26,395 + LU632_RS25450 0.70 +0.4 26,492 - +1.0 26,535 + -0.3 26,536 - -0.4 26,653 + +0.1 26,656 - +0.6 26,714 - -1.1 26,730 - -3.2 26,796 + +2.4 26,797 - +0.3 26,820 + LU632_RS25455 0.14 +0.5 26,868 + LU632_RS25455 0.29 -2.1 26,869 - LU632_RS25455 0.30 -0.4 27,085 + -0.9
Or see this region's nucleotide sequence