Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25380

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
7,932	-	traQ	LU632_RS25370	0.12	-0.6
8,010	+	traQ	LU632_RS25370	0.27	+1.1
8,089	-	traQ	LU632_RS25370	0.42	-1.4
8,140	+	traQ	LU632_RS25370	0.52	-0.0
8,141	-	traQ	LU632_RS25370	0.52	+0.1
8,234	+	traQ	LU632_RS25370	0.70	+0.6
8,234	+	traQ	LU632_RS25370	0.70	+0.7
8,234	+	traQ	LU632_RS25370	0.70	+0.5
8,235	-	traQ	LU632_RS25370	0.70	+0.4
8,235	-	traQ	LU632_RS25370	0.70	-0.6
8,235	-	traQ	LU632_RS25370	0.70	-1.5
8,392	+				+1.2
8,400	+				+3.2
8,643	-		LU632_RS25375	0.58	-0.8
8,645	+		LU632_RS25375	0.58	-0.6
8,654	-		LU632_RS25375	0.61	-0.8
8,842	+				-0.0
8,930	+				+0.8
8,972	+		LU632_RS25380	0.12	-0.2
9,042	+		LU632_RS25380	0.19	-0.8
9,213	-		LU632_RS25380	0.37	-2.0
9,338	+		LU632_RS25380	0.51	-1.2
9,404	+		LU632_RS25380	0.57	+0.4
9,409	+		LU632_RS25380	0.58	+2.5
9,409	+		LU632_RS25380	0.58	-0.3
9,409	+		LU632_RS25380	0.58	+1.1
9,410	-		LU632_RS25380	0.58	+0.4
9,410	-		LU632_RS25380	0.58	+2.6
9,410	-		LU632_RS25380	0.58	+0.4
9,410	-		LU632_RS25380	0.58	+0.2
9,465	+		LU632_RS25380	0.64	-1.8
9,466	-		LU632_RS25380	0.64	+1.8
9,466	-		LU632_RS25380	0.64	+0.1
9,466	-		LU632_RS25380	0.64	-1.0
9,783	+				-1.2
9,784	-				+0.4
9,793	-				+0.4
9,816	+				-1.1
9,817	-				-1.6
9,982	+				-0.2
9,983	-				+0.2
9,995	+				+1.4
9,996	-				-1.5
9,996	-				+1.4
9,996	-				-1.1
9,996	-				+1.4
9,997	+				-0.7
9,998	-				+0.8
9,998	-				+0.4
9,998	-				+0.4
10,022	+				+0.9
10,052	+				+1.2
10,052	+				+1.5
10,052	+				-0.6
10,053	-				+0.4
10,117	+				+0.3
10,117	+				-2.1
10,121	+				-2.1
10,121	+				+1.4
10,121	+				-2.4
10,122	-				+0.3
10,122	-				+1.4
10,122	-				-3.0
10,301	-		LU632_RS25385	0.15	-0.8
10,301	-		LU632_RS25385	0.15	+1.3
10,352	+		LU632_RS25385	0.17	+2.0
10,353	-		LU632_RS25385	0.17	+0.5
10,354	+		LU632_RS25385	0.17	+1.4
10,564	+		LU632_RS25385	0.24	+3.4
10,565	-		LU632_RS25385	0.24	-2.3
10,650	+		LU632_RS25385	0.27	-1.2
10,650	+		LU632_RS25385	0.27	-0.4
10,650	+		LU632_RS25385	0.27	-1.2
10,651	-		LU632_RS25385	0.27	-0.6
10,651	-		LU632_RS25385	0.27	-2.5
10,651	-		LU632_RS25385	0.27	-1.0
10,651	-		LU632_RS25385	0.27	-1.5
10,651	-		LU632_RS25385	0.27	-0.9