Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24390

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,650,464	-	ilvC	LU632_RS24385	0.54	-3.5
4,650,584	-	ilvC	LU632_RS24385	0.62	-2.0
4,650,595	+	ilvC	LU632_RS24385	0.63	-2.2
4,650,596	-	ilvC	LU632_RS24385	0.63	+0.1
4,650,713	-	ilvC	LU632_RS24385	0.71	-1.7
4,650,792	-	ilvC	LU632_RS24385	0.76	-1.5
4,650,980	-	ilvC	LU632_RS24385	0.89	+0.4
4,651,091	-				-0.2
4,651,091	-				-2.7
4,651,104	-				-0.6
4,651,134	+				-3.8
4,651,157	+				-3.9
4,651,157	+				+0.0
4,651,157	+				-1.9
4,651,158	-				-1.6
4,651,225	+				-1.3
4,651,240	-				-0.9
4,651,254	+				+0.0
4,651,256	+				-0.6
4,651,257	-				-0.8
4,651,259	+				-0.8
4,651,291	-				-0.4
4,651,326	+				+0.4
4,651,327	-				+1.4
4,651,450	-	ilvY	LU632_RS24390	0.16	+0.3
4,651,450	-	ilvY	LU632_RS24390	0.16	+0.7
4,651,453	+	ilvY	LU632_RS24390	0.16	-0.3
4,651,453	+	ilvY	LU632_RS24390	0.16	+0.2
4,651,542	+	ilvY	LU632_RS24390	0.26	+0.4
4,651,542	+	ilvY	LU632_RS24390	0.26	+2.3
4,651,543	-	ilvY	LU632_RS24390	0.26	+0.7
4,651,616	+	ilvY	LU632_RS24390	0.35	+1.6
4,651,626	+	ilvY	LU632_RS24390	0.36	-0.3
4,651,680	+	ilvY	LU632_RS24390	0.42	-0.8
4,651,827	+	ilvY	LU632_RS24390	0.59	+1.0
4,651,844	-	ilvY	LU632_RS24390	0.61	+2.5
4,651,844	-	ilvY	LU632_RS24390	0.61	+0.7
4,652,080	+	ilvY	LU632_RS24390	0.87	+0.9
4,652,165	-				-1.4
4,652,189	+				+0.9
4,652,213	+				+0.2
4,652,213	+				+0.9
4,652,213	+				-1.3
4,652,213	+				+1.3
4,652,213	+				+0.0
4,652,214	-				+0.5
4,652,214	-				+2.1
4,652,214	-				-0.2
4,652,214	-				-2.2
4,652,252	+				+0.4
4,652,293	+				-3.0
4,652,293	+				+1.7
4,652,293	+				-1.8
4,652,294	-				-1.6
4,652,348	+				-0.2
4,652,521	-	ilvA	LU632_RS24395	0.14	+0.3
4,652,599	+	ilvA	LU632_RS24395	0.19	-1.8
4,652,650	+	ilvA	LU632_RS24395	0.22	-1.4
4,652,963	+	ilvA	LU632_RS24395	0.42	+0.2
4,652,965	+	ilvA	LU632_RS24395	0.43	-1.6
4,652,965	+	ilvA	LU632_RS24395	0.43	-1.1
4,652,965	+	ilvA	LU632_RS24395	0.43	-1.8
4,652,966	-	ilvA	LU632_RS24395	0.43	+1.5
4,652,966	-	ilvA	LU632_RS24395	0.43	+1.1
4,653,088	+	ilvA	LU632_RS24395	0.50	-1.2
4,653,089	-	ilvA	LU632_RS24395	0.51	-1.7
4,653,089	-	ilvA	LU632_RS24395	0.51	+0.4