Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24270

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,629,407	+	rhlB	LU632_RS24265	0.29	-2.0
4,629,850	+	rhlB	LU632_RS24265	0.63	+0.3
4,629,957	+	rhlB	LU632_RS24265	0.71	-0.0
4,630,055	+	rhlB	LU632_RS24265	0.79	-0.3
4,630,157	+	rhlB	LU632_RS24265	0.87	-0.0
4,630,157	+	rhlB	LU632_RS24265	0.87	-2.5
4,630,391	-				-0.9
4,630,729	+	gppA	LU632_RS24270	0.27	-0.3
4,630,845	-	gppA	LU632_RS24270	0.34	-2.0
4,631,254	+	gppA	LU632_RS24270	0.62	-1.2
4,631,323	-	gppA	LU632_RS24270	0.67	-2.4
4,631,927	-				-1.1
4,632,035	+		LU632_RS24275	0.11	-2.2
4,632,038	+		LU632_RS24275	0.11	+1.0
4,632,038	+		LU632_RS24275	0.11	-0.6
4,632,044	+		LU632_RS24275	0.12	+1.0
4,632,074	-		LU632_RS24275	0.13	+0.6
4,632,108	+		LU632_RS24275	0.15	+1.3
4,632,109	-		LU632_RS24275	0.15	-1.0
4,632,109	-		LU632_RS24275	0.15	-0.5
4,632,110	+		LU632_RS24275	0.15	-0.3
4,632,110	+		LU632_RS24275	0.15	-0.2
4,632,110	+		LU632_RS24275	0.15	+1.5
4,632,111	-		LU632_RS24275	0.16	-1.0
4,632,146	+		LU632_RS24275	0.18	-1.2
4,632,148	+		LU632_RS24275	0.18	+1.1
4,632,149	-		LU632_RS24275	0.18	-0.8
4,632,149	-		LU632_RS24275	0.18	-0.4
4,632,212	+		LU632_RS24275	0.21	-0.9
4,632,244	+		LU632_RS24275	0.23	+1.4
4,632,244	+		LU632_RS24275	0.23	-0.8
4,632,245	-		LU632_RS24275	0.23	+1.2
4,632,245	-		LU632_RS24275	0.23	-0.5
4,632,245	-		LU632_RS24275	0.23	+0.7
4,632,245	-		LU632_RS24275	0.23	-1.1
4,632,245	-		LU632_RS24275	0.23	+1.7
4,632,335	+		LU632_RS24275	0.29	+1.7
4,632,352	-		LU632_RS24275	0.30	+3.8
4,632,352	-		LU632_RS24275	0.30	-0.4
4,632,355	+		LU632_RS24275	0.30	+0.1
4,632,355	+		LU632_RS24275	0.30	-2.0
4,632,355	+		LU632_RS24275	0.30	-1.5
4,632,355	+		LU632_RS24275	0.30	+0.6
4,632,356	-		LU632_RS24275	0.30	+0.7
4,632,408	-		LU632_RS24275	0.33	+0.1
4,632,408	-		LU632_RS24275	0.33	-0.4
4,632,437	+		LU632_RS24275	0.34	+1.6
4,632,444	-		LU632_RS24275	0.35	+0.4
4,632,527	+		LU632_RS24275	0.40	-0.1
4,632,527	+		LU632_RS24275	0.40	+2.0
4,632,545	+		LU632_RS24275	0.41	-1.1
4,632,545	+		LU632_RS24275	0.41	-1.6
4,632,545	+		LU632_RS24275	0.41	-0.2
4,632,546	-		LU632_RS24275	0.41	+4.9
4,632,546	-		LU632_RS24275	0.41	-1.3
4,632,546	-		LU632_RS24275	0.41	-0.3
4,632,588	-		LU632_RS24275	0.43	+0.1
4,632,606	+		LU632_RS24275	0.44	+1.3
4,632,782	+		LU632_RS24275	0.54	+1.2
4,632,783	-		LU632_RS24275	0.55	-0.2