Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23765

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,534,810	-				-0.8
4,534,811	+				-0.4
4,534,910	+				+0.5
4,534,911	-				+0.8
4,534,911	-				-0.2
4,534,911	-				-0.5
4,534,911	-				+0.0
4,534,913	-				+1.9
4,534,914	+				-0.7
4,534,917	+				+0.4
4,535,003	+				-0.5
4,535,006	+				+0.4
4,535,007	-				-0.6
4,535,007	-				+1.7
4,535,007	-				-0.2
4,535,018	-				-1.1
4,535,018	-				+1.0
4,535,018	-				+0.4
4,535,022	+				-0.2
4,535,028	-				-2.5
4,535,078	-				-1.6
4,535,081	-				-2.4
4,535,111	+				-0.2
4,535,153	+				+0.5
4,535,153	+				-0.3
4,535,153	+				+1.2
4,535,153	+				-1.8
4,535,153	+				+0.4
4,535,154	-				+0.2
4,535,154	-				-1.4
4,535,154	-				-0.0
4,535,315	-				+0.4
4,535,315	-				+3.7
4,535,315	-				-0.5
4,535,346	-				-1.2
4,535,494	+				+2.6
4,535,494	+				-2.7
4,535,596	+	dusA	LU632_RS23765	0.19	-0.4
4,535,596	+	dusA	LU632_RS23765	0.19	-1.2
4,535,596	+	dusA	LU632_RS23765	0.19	+0.1
4,535,597	-	dusA	LU632_RS23765	0.19	-0.2
4,535,597	-	dusA	LU632_RS23765	0.19	+0.4
4,535,652	-	dusA	LU632_RS23765	0.24	+3.3
4,535,652	-	dusA	LU632_RS23765	0.24	-0.2
4,535,734	-	dusA	LU632_RS23765	0.32	-0.3
4,535,787	+	dusA	LU632_RS23765	0.37	-1.6
4,535,787	+	dusA	LU632_RS23765	0.37	-2.5
4,535,788	-	dusA	LU632_RS23765	0.37	+0.6
4,535,788	-	dusA	LU632_RS23765	0.37	-2.0
4,535,788	-	dusA	LU632_RS23765	0.37	-0.3
4,535,885	+	dusA	LU632_RS23765	0.46	-0.8
4,535,900	+	dusA	LU632_RS23765	0.48	+0.2
4,535,900	+	dusA	LU632_RS23765	0.48	-0.1
4,535,900	+	dusA	LU632_RS23765	0.48	+0.4
4,535,900	+	dusA	LU632_RS23765	0.48	-0.3
4,535,901	-	dusA	LU632_RS23765	0.48	-0.3
4,535,901	-	dusA	LU632_RS23765	0.48	-0.6
4,535,901	-	dusA	LU632_RS23765	0.48	-1.0
4,535,901	-	dusA	LU632_RS23765	0.48	+0.3
4,535,901	-	dusA	LU632_RS23765	0.48	+0.0
4,536,032	+	dusA	LU632_RS23765	0.60	-2.6
4,536,033	-	dusA	LU632_RS23765	0.60	+1.4
4,536,134	+	dusA	LU632_RS23765	0.70	+0.2
4,536,134	+	dusA	LU632_RS23765	0.70	-0.9
4,536,134	+	dusA	LU632_RS23765	0.70	+0.4
4,536,135	-	dusA	LU632_RS23765	0.70	+3.0
4,536,135	-	dusA	LU632_RS23765	0.70	-0.2
4,536,239	-	dusA	LU632_RS23765	0.80	-0.8
4,536,286	+	dusA	LU632_RS23765	0.84	-1.2
4,536,287	-	dusA	LU632_RS23765	0.84	-0.2
4,536,540	+				+0.0
4,536,541	-				-1.4
4,536,547	+				+0.8
4,536,550	+				-1.7
4,536,550	+				+0.4
4,536,551	-				+1.3
4,536,552	+				+0.2
4,536,553	-				-1.6
4,536,553	-				-0.6
4,536,557	+				-1.9
4,536,557	+				+0.9
4,536,558	-				+0.4
4,536,561	-				-2.4
4,536,587	+		LU632_RS23770	0.12	+0.0
4,536,633	-		LU632_RS23770	0.23	+1.5
4,536,633	-		LU632_RS23770	0.23	-0.4
4,536,765	-		LU632_RS23770	0.57	-0.8
4,536,773	-		LU632_RS23770	0.59	+0.6
4,536,775	-		LU632_RS23770	0.59	-1.8
4,536,775	-		LU632_RS23770	0.59	-0.3
4,536,775	-		LU632_RS23770	0.59	+0.4
4,536,821	-		LU632_RS23770	0.71	-0.8
4,536,821	-		LU632_RS23770	0.71	-1.0
4,536,821	-		LU632_RS23770	0.71	-0.0
4,536,821	-		LU632_RS23770	0.71	+1.2
4,536,851	+		LU632_RS23770	0.78	-0.3
4,536,851	+		LU632_RS23770	0.78	-1.0
4,536,852	-		LU632_RS23770	0.79	-0.8
4,536,863	+		LU632_RS23770	0.81	+1.8
4,536,863	+		LU632_RS23770	0.81	+1.1
4,536,868	-		LU632_RS23770	0.83	-0.6
4,536,957	+				-1.2
4,536,959	+				-0.0
4,536,959	+				+0.1
4,536,960	-				-0.4
4,537,070	+		LU632_RS23775	0.28	-0.8
4,537,071	-		LU632_RS23775	0.28	-0.3
4,537,144	-		LU632_RS23775	0.41	+2.7
4,537,144	-		LU632_RS23775	0.41	+0.1
4,537,153	+		LU632_RS23775	0.43	+0.4
4,537,276	-		LU632_RS23775	0.66	-0.3
4,537,406	-				-0.6