Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23560 and LU632_RS23565 overlap by 4 nucleotides LU632_RS23565 and fni overlap by 14 nucleotides fni and LU632_RS23575 are separated by 101 nucleotides LU632_RS23575 and LU632_RS23580 overlap by 22 nucleotides LU632_RS23580 and LU632_RS23585 are separated by 8 nucleotides
LU632_RS23560: LU632_RS23560 - hypothetical protein, at 4,494,676 to 4,496,247
_RS23560
LU632_RS23565: LU632_RS23565 - hypothetical protein, at 4,496,244 to 4,497,194
_RS23565
LU632_RS23570: fni - type 2 isopentenyl-diphosphate Delta-isomerase, at 4,497,181 to 4,498,230
fni
LU632_RS23575: LU632_RS23575 - hypothetical protein, at 4,498,332 to 4,498,457
_RS23575
LU632_RS23580: LU632_RS23580 - hypothetical protein, at 4,498,436 to 4,498,561
_RS23580
LU632_RS23585: LU632_RS23585 - transposase, at 4,498,570 to 4,499,225
_RS23585
Position (kb) 4497
4498
4499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4496.243 kb on + strand at 4496.348 kb on + strand, within LU632_RS23565 at 4496.436 kb on + strand, within LU632_RS23565 at 4496.436 kb on + strand, within LU632_RS23565 at 4496.437 kb on - strand, within LU632_RS23565 at 4496.437 kb on - strand, within LU632_RS23565 at 4496.456 kb on - strand, within LU632_RS23565 at 4496.522 kb on + strand, within LU632_RS23565 at 4496.553 kb on - strand, within LU632_RS23565 at 4496.553 kb on - strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.079 kb on - strand, within LU632_RS23565 at 4497.079 kb on - strand, within LU632_RS23565 at 4497.082 kb on - strand, within LU632_RS23565 at 4497.196 kb on - strand at 4497.200 kb on + strand at 4497.400 kb on - strand, within fni at 4497.532 kb on - strand, within fni at 4497.532 kb on - strand, within fni at 4497.791 kb on + strand, within fni at 4497.792 kb on - strand, within fni at 4497.792 kb on - strand, within fni at 4497.819 kb on - strand, within fni at 4498.310 kb on - strand at 4498.321 kb on + strand at 4498.328 kb on - strand at 4498.453 kb on + strand at 4498.454 kb on - strand at 4498.559 kb on + strand at 4498.560 kb on - strand at 4498.663 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.726 kb on + strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.729 kb on - strand, within LU632_RS23585 at 4498.729 kb on - strand, within LU632_RS23585 at 4498.831 kb on - strand, within LU632_RS23585 at 4498.932 kb on + strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.968 kb on + strand, within LU632_RS23585 at 4499.020 kb on - strand, within LU632_RS23585 at 4499.082 kb on - strand, within LU632_RS23585 at 4499.197 kb on + strand at 4499.198 kb on - strand at 4499.211 kb on + strand at 4499.211 kb on + strand at 4499.211 kb on + strand at 4499.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 4,496,243 + -0.2 4,496,348 + LU632_RS23565 0.11 -0.4 4,496,436 + LU632_RS23565 0.20 +1.0 4,496,436 + LU632_RS23565 0.20 +3.0 4,496,437 - LU632_RS23565 0.20 +0.6 4,496,437 - LU632_RS23565 0.20 -0.9 4,496,456 - LU632_RS23565 0.22 -0.3 4,496,522 + LU632_RS23565 0.29 +0.7 4,496,553 - LU632_RS23565 0.32 -1.5 4,496,553 - LU632_RS23565 0.32 +0.8 4,497,078 + LU632_RS23565 0.88 -1.5 4,497,078 + LU632_RS23565 0.88 -0.6 4,497,078 + LU632_RS23565 0.88 -1.0 4,497,079 - LU632_RS23565 0.88 -0.4 4,497,079 - LU632_RS23565 0.88 +0.3 4,497,082 - LU632_RS23565 0.88 +0.5 4,497,196 - +0.6 4,497,200 + -1.0 4,497,400 - fni LU632_RS23570 0.21 -1.2 4,497,532 - fni LU632_RS23570 0.33 +1.0 4,497,532 - fni LU632_RS23570 0.33 +0.1 4,497,791 + fni LU632_RS23570 0.58 -0.4 4,497,792 - fni LU632_RS23570 0.58 +1.8 4,497,792 - fni LU632_RS23570 0.58 +0.0 4,497,819 - fni LU632_RS23570 0.61 -0.3 4,498,310 - +0.9 4,498,321 + +2.0 4,498,328 - -0.0 4,498,453 + -0.2 4,498,454 - +1.3 4,498,559 + -0.4 4,498,560 - -1.7 4,498,663 - LU632_RS23585 0.14 -1.7 4,498,665 - LU632_RS23585 0.14 +3.3 4,498,665 - LU632_RS23585 0.14 -1.3 4,498,665 - LU632_RS23585 0.14 -0.8 4,498,726 + LU632_RS23585 0.24 -0.4 4,498,727 - LU632_RS23585 0.24 +0.3 4,498,727 - LU632_RS23585 0.24 +0.0 4,498,727 - LU632_RS23585 0.24 +2.0 4,498,727 - LU632_RS23585 0.24 +0.5 4,498,729 - LU632_RS23585 0.24 +0.9 4,498,729 - LU632_RS23585 0.24 -3.5 4,498,831 - LU632_RS23585 0.40 +1.4 4,498,932 + LU632_RS23585 0.55 +0.8 4,498,933 - LU632_RS23585 0.55 +0.6 4,498,933 - LU632_RS23585 0.55 -2.0 4,498,933 - LU632_RS23585 0.55 +0.7 4,498,968 + LU632_RS23585 0.61 +2.1 4,499,020 - LU632_RS23585 0.69 -1.2 4,499,082 - LU632_RS23585 0.78 -0.3 4,499,197 + +0.3 4,499,198 - -1.9 4,499,211 + +1.2 4,499,211 + +6.1 4,499,211 + -1.1 4,499,211 + -0.3
Or see this region's nucleotide sequence