Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23360

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,450,831	+		LU632_RS23355	0.77	-0.8
4,450,937	-		LU632_RS23355	0.82	-0.4
4,450,937	-		LU632_RS23355	0.82	-0.2
4,451,019	-		LU632_RS23355	0.86	-1.2
4,451,056	+		LU632_RS23355	0.87	-0.1
4,451,057	-		LU632_RS23355	0.87	-1.0
4,451,057	-		LU632_RS23355	0.87	+0.8
4,451,057	-		LU632_RS23355	0.87	+0.4
4,451,075	-		LU632_RS23355	0.88	-1.2
4,451,181	-				+1.2
4,451,181	-				-1.3
4,451,225	+				+1.4
4,451,225	+				-0.8
4,451,225	+				-1.2
4,451,225	+				+0.0
4,451,225	+				-0.6
4,451,225	+				-1.4
4,451,225	+				-0.2
4,451,226	-				-1.7
4,451,226	-				-1.1
4,451,280	+				+0.0
4,451,321	+				-0.1
4,451,321	+				-1.4
4,451,344	-				+3.0
4,451,371	-				-1.4
4,451,490	-				+1.6
4,451,493	-				+0.4
4,451,493	-				+1.0
4,451,531	-				-3.1
4,451,591	-				+0.1
4,451,607	+				+1.4
4,451,634	+				-0.9
4,451,634	+				+1.3
4,451,685	+				+0.3
4,451,708	+				-0.7
4,451,715	-				-0.6
4,451,720	+				-1.1
4,451,721	-				+0.8
4,451,749	+				-3.0
4,451,812	+		LU632_RS23360	0.12	-0.1
4,451,817	+		LU632_RS23360	0.13	-0.7
4,451,817	+		LU632_RS23360	0.13	-0.8
4,451,820	-		LU632_RS23360	0.13	-4.1
4,451,820	-		LU632_RS23360	0.13	-1.5
4,451,965	-		LU632_RS23360	0.32	+0.0
4,452,053	+		LU632_RS23360	0.43	-2.8
4,452,268	-		LU632_RS23360	0.71	-0.7
4,452,279	-		LU632_RS23360	0.72	-1.2
4,452,486	+				-2.0
4,452,487	-				-0.3
4,452,487	-				-2.5
4,452,487	-				-0.6
4,452,605	+				+1.3
4,452,605	+				-0.3
4,452,671	-		LU632_RS23365	0.16	+0.0
4,452,690	+		LU632_RS23365	0.18	+0.1
4,452,919	-		LU632_RS23365	0.44	-0.6
4,452,920	+		LU632_RS23365	0.44	+1.2
4,452,921	-		LU632_RS23365	0.44	+2.2
4,452,921	-		LU632_RS23365	0.44	+0.4
4,452,955	-		LU632_RS23365	0.48	-1.7
4,453,001	-		LU632_RS23365	0.53	-2.9
4,453,001	-		LU632_RS23365	0.53	+0.4
4,453,201	+		LU632_RS23365	0.75	-2.0
4,453,201	+		LU632_RS23365	0.75	+0.4
4,453,202	-		LU632_RS23365	0.75	-1.2
4,453,218	+		LU632_RS23365	0.77	-1.1
4,453,218	+		LU632_RS23365	0.77	+1.0
4,453,360	-				+1.0
4,453,360	-				+0.2
4,453,391	-				-1.7
4,453,491	-				+1.5