Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23355

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,448,978	+				-1.8
4,448,979	-				-1.0
4,448,986	+				+0.5
4,448,987	-				-0.4
4,449,163	-				+1.6
4,449,167	-				-2.1
4,449,243	+				+2.6
4,449,243	+				+1.5
4,449,244	-				+0.5
4,449,275	+				-0.2
4,449,275	+				+0.1
4,449,275	+				+2.5
4,449,275	+				-1.0
4,449,275	+				-2.3
4,449,275	+				-0.1
4,449,275	+				-0.5
4,449,276	-				-2.1
4,449,278	-				-0.7
4,449,278	-				+1.0
4,449,278	-				-0.7
4,449,331	+				-0.4
4,449,332	-				-0.6
4,449,338	+				-0.9
4,449,340	+				-0.1
4,449,501	-		LU632_RS23355	0.14	+0.2
4,449,524	-		LU632_RS23355	0.15	-1.3
4,449,635	-		LU632_RS23355	0.20	+0.9
4,449,864	-		LU632_RS23355	0.31	-0.7
4,449,866	+		LU632_RS23355	0.31	-0.7
4,449,867	-		LU632_RS23355	0.31	-0.7
4,449,867	-		LU632_RS23355	0.31	+0.2
4,449,960	+		LU632_RS23355	0.36	-0.7
4,450,222	+		LU632_RS23355	0.48	+2.5
4,450,222	+		LU632_RS23355	0.48	-1.3
4,450,223	-		LU632_RS23355	0.48	+0.3
4,450,223	-		LU632_RS23355	0.48	+0.6
4,450,223	-		LU632_RS23355	0.48	-1.5
4,450,227	-		LU632_RS23355	0.48	-0.3
4,450,227	-		LU632_RS23355	0.48	-0.5
4,450,337	-		LU632_RS23355	0.54	+0.7
4,450,337	-		LU632_RS23355	0.54	-0.4
4,450,364	+		LU632_RS23355	0.55	-1.0
4,450,393	+		LU632_RS23355	0.56	-0.7
4,450,425	-		LU632_RS23355	0.58	-1.9
4,450,469	+		LU632_RS23355	0.60	+0.7
4,450,591	+		LU632_RS23355	0.65	+0.2
4,450,591	-		LU632_RS23355	0.65	+1.3
4,450,592	-		LU632_RS23355	0.66	-2.2
4,450,831	+		LU632_RS23355	0.77	-0.8
4,450,937	-		LU632_RS23355	0.82	-0.4
4,450,937	-		LU632_RS23355	0.82	-0.2
4,451,019	-		LU632_RS23355	0.86	-1.2
4,451,056	+		LU632_RS23355	0.87	-0.1
4,451,057	-		LU632_RS23355	0.87	-1.0
4,451,057	-		LU632_RS23355	0.87	+0.8
4,451,057	-		LU632_RS23355	0.87	+0.4
4,451,075	-		LU632_RS23355	0.88	-1.2
4,451,181	-				+1.2
4,451,181	-				-1.3
4,451,225	+				+1.4
4,451,225	+				-0.8
4,451,225	+				-1.2
4,451,225	+				+0.0
4,451,225	+				-0.6
4,451,225	+				-1.4
4,451,225	+				-0.2
4,451,226	-				-1.7
4,451,226	-				-1.1
4,451,280	+				+0.0
4,451,321	+				-0.1
4,451,321	+				-1.4
4,451,344	-				+3.0
4,451,371	-				-1.4
4,451,490	-				+1.6
4,451,493	-				+0.4
4,451,493	-				+1.0
4,451,531	-				-3.1
4,451,591	-				+0.1
4,451,607	+				+1.4
4,451,634	+				-0.9
4,451,634	+				+1.3
4,451,685	+				+0.3
4,451,708	+				-0.7
4,451,715	-				-0.6
4,451,720	+				-1.1
4,451,721	-				+0.8
4,451,749	+				-3.0
4,451,812	+		LU632_RS23360	0.12	-0.1
4,451,817	+		LU632_RS23360	0.13	-0.7
4,451,817	+		LU632_RS23360	0.13	-0.8
4,451,820	-		LU632_RS23360	0.13	-4.1
4,451,820	-		LU632_RS23360	0.13	-1.5
4,451,965	-		LU632_RS23360	0.32	+0.0
4,452,053	+		LU632_RS23360	0.43	-2.8
4,452,268	-		LU632_RS23360	0.71	-0.7
4,452,279	-		LU632_RS23360	0.72	-1.2