Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22860

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,352,105	-				+1.7
4,352,105	-				+0.1
4,352,112	-				-0.1
4,352,112	-				-0.7
4,352,112	-				+0.2
4,352,143	-				+0.3
4,352,143	-				+0.4
4,352,143	-				+1.2
4,352,351	-		LU632_RS22860	0.14	-0.0
4,352,424	-		LU632_RS22860	0.21	-3.0
4,352,465	-		LU632_RS22860	0.25	-0.2
4,353,213	-				-0.7
4,353,252	-				-2.5
4,353,332	-				-0.0
4,353,350	-				-0.5
4,353,439	-	aroB	LU632_RS22865	0.13	-0.6
4,353,439	-	aroB	LU632_RS22865	0.13	+2.0
4,353,503	-	aroB	LU632_RS22865	0.19	-1.3
4,353,824	-	aroB	LU632_RS22865	0.49	-1.0
4,353,824	-	aroB	LU632_RS22865	0.49	+0.4
4,354,010	-	aroB	LU632_RS22865	0.66	-0.0
4,354,157	-	aroB	LU632_RS22865	0.79	+1.0
4,354,197	-	aroB	LU632_RS22865	0.83	-0.0
4,354,197	-	aroB	LU632_RS22865	0.83	+0.4