Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22820

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,343,957	-		LU632_RS22810	0.89	+2.0
4,343,959	-		LU632_RS22810	0.89	-2.5
4,344,040	+				-1.0
4,344,160	+				+1.8
4,344,161	-				+2.1
4,344,184	+				-0.8
4,344,242	+		LU632_RS22815	0.12	-0.6
4,344,726	+				-2.6
4,344,727	-				+0.7
4,344,727	-				+1.0
4,344,776	+				-0.2
4,344,835	-				+0.4
4,344,965	-	ppiA	LU632_RS22820	0.20	+0.4
4,345,084	+	ppiA	LU632_RS22820	0.41	-0.2
4,345,084	+	ppiA	LU632_RS22820	0.41	-0.4
4,345,090	+	ppiA	LU632_RS22820	0.42	+1.5
4,345,148	-	ppiA	LU632_RS22820	0.52	+0.4
4,345,192	+	ppiA	LU632_RS22820	0.60	-0.1
4,345,193	-	ppiA	LU632_RS22820	0.60	+1.2
4,345,222	+	ppiA	LU632_RS22820	0.65	-0.3
4,345,229	-	ppiA	LU632_RS22820	0.66	-0.2
4,345,229	-	ppiA	LU632_RS22820	0.66	-0.1
4,345,230	+	ppiA	LU632_RS22820	0.66	+0.3
4,345,322	-	ppiA	LU632_RS22820	0.82	+0.3
4,345,411	+				-1.7
4,345,441	-				-1.1
4,345,509	+				-2.4
4,345,510	-				-0.7
4,345,525	+				-0.3
4,345,526	-				-0.7
4,345,531	+				-1.2
4,345,557	+				-0.4
4,345,558	-				-0.8
4,345,561	+				-1.5
4,345,561	+				+0.2
4,345,562	-				+1.4
4,345,563	+				+1.1
4,345,564	-				-1.0
4,345,585	+				+2.8
4,345,585	+				-0.2
4,345,585	+				+0.1
4,345,585	+				-1.1
4,345,585	+				+0.4
4,345,588	+				+1.4
4,345,614	+				-1.2
4,345,615	-				+2.5
4,345,615	-				-0.7
4,345,746	+				-0.0
4,345,746	+				-0.3
4,345,796	+				+0.3
4,345,797	-				-1.5
4,345,806	+				-0.4
4,345,807	-				+1.0
4,345,925	-	tsgA	LU632_RS22825	0.19	+0.2
4,345,943	-	tsgA	LU632_RS22825	0.21	+0.4
4,345,943	-	tsgA	LU632_RS22825	0.21	+0.3
4,346,011	+	tsgA	LU632_RS22825	0.26	+2.1
4,346,012	-	tsgA	LU632_RS22825	0.26	-0.6
4,346,020	+	tsgA	LU632_RS22825	0.27	+0.5
4,346,021	-	tsgA	LU632_RS22825	0.27	+1.0
4,346,070	+	tsgA	LU632_RS22825	0.31	-0.0
4,346,194	-	tsgA	LU632_RS22825	0.42	-1.6
4,346,201	+	tsgA	LU632_RS22825	0.42	-1.6
4,346,207	-	tsgA	LU632_RS22825	0.43	-0.3
4,346,346	+	tsgA	LU632_RS22825	0.55	+0.4
4,346,346	+	tsgA	LU632_RS22825	0.55	-0.6
4,346,346	+	tsgA	LU632_RS22825	0.55	-0.3
4,346,347	-	tsgA	LU632_RS22825	0.55	-0.6
4,346,347	-	tsgA	LU632_RS22825	0.55	-2.9
4,346,389	-	tsgA	LU632_RS22825	0.58	+0.8
4,346,397	-	tsgA	LU632_RS22825	0.59	+1.3