Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22660

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,316,944	-				-0.3
4,317,003	+		LU632_RS22665	0.13	-1.7
4,317,014	+		LU632_RS22665	0.15	-0.8
4,317,066	+		LU632_RS22665	0.28	-0.2
4,317,241	+		LU632_RS22665	0.70	+1.2
4,317,241	+		LU632_RS22665	0.70	-0.8
4,317,241	+		LU632_RS22665	0.70	+2.0
4,317,242	-		LU632_RS22665	0.71	-0.2
4,317,242	-		LU632_RS22665	0.71	-0.0
4,317,292	-		LU632_RS22665	0.83	-0.5
4,317,293	+		LU632_RS22665	0.83	-0.0
4,317,369	-				+0.0
4,317,370	+				-0.3
4,317,370	+				-0.1
4,317,443	+		LU632_RS22670	0.14	-0.3
4,317,525	+		LU632_RS22670	0.27	+1.4
4,317,526	-		LU632_RS22670	0.28	-2.0
4,317,534	+		LU632_RS22670	0.29	-0.1
4,317,609	+		LU632_RS22670	0.41	+0.5
4,317,622	+		LU632_RS22670	0.43	+0.1
4,317,671	+		LU632_RS22670	0.52	+0.9