Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22435 and LU632_RS22440 overlap by 25 nucleotides LU632_RS22440 and aroE overlap by 4 nucleotides aroE and tsaC are separated by 5 nucleotides tsaC and LU632_RS22455 overlap by 8 nucleotides
LU632_RS22435: LU632_RS22435 - gamma carbonic anhydrase family protein, at 4,289,282 to 4,289,836
_RS22435
LU632_RS22440: LU632_RS22440 - DUF1488 domain-containing protein, at 4,289,812 to 4,290,063
_RS22440
LU632_RS22445: aroE - shikimate dehydrogenase, at 4,290,060 to 4,290,881
aroE
LU632_RS22450: tsaC - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 4,290,887 to 4,291,459
tsaC
LU632_RS22455: LU632_RS22455 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 4,291,452 to 4,292,006
_RS22455
Position (kb) 4290
4291 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4289.168 kb on - strand at 4289.215 kb on + strand at 4289.215 kb on + strand at 4289.262 kb on + strand at 4289.266 kb on + strand at 4289.296 kb on - strand at 4289.407 kb on - strand, within LU632_RS22435 at 4289.437 kb on + strand, within LU632_RS22435 at 4289.437 kb on + strand, within LU632_RS22435 at 4289.475 kb on + strand, within LU632_RS22435 at 4289.475 kb on + strand, within LU632_RS22435 at 4289.476 kb on - strand, within LU632_RS22435 at 4289.476 kb on - strand, within LU632_RS22435 at 4289.485 kb on - strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.705 kb on + strand, within LU632_RS22435 at 4289.706 kb on - strand, within LU632_RS22435 at 4289.709 kb on + strand, within LU632_RS22435 at 4289.755 kb on + strand, within LU632_RS22435 at 4289.756 kb on - strand, within LU632_RS22435 at 4289.783 kb on + strand at 4289.923 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.947 kb on - strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4290.178 kb on - strand, within aroE at 4290.263 kb on - strand, within aroE at 4290.266 kb on + strand, within aroE at 4290.270 kb on + strand, within aroE at 4290.437 kb on + strand, within aroE at 4290.438 kb on - strand, within aroE at 4290.475 kb on - strand, within aroE at 4290.620 kb on + strand, within aroE at 4290.686 kb on + strand, within aroE at 4290.728 kb on + strand, within aroE at 4290.822 kb on + strand at 4290.822 kb on + strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.825 kb on - strand at 4291.755 kb on - strand, within LU632_RS22455 at 4291.755 kb on - strand, within LU632_RS22455 at 4291.820 kb on - strand, within LU632_RS22455 at 4291.880 kb on - strand, within LU632_RS22455
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 4,289,168 - -0.2 4,289,215 + -0.1 4,289,215 + -0.6 4,289,262 + +1.4 4,289,266 + +0.5 4,289,296 - +1.7 4,289,407 - LU632_RS22435 0.23 +0.4 4,289,437 + LU632_RS22435 0.28 +0.4 4,289,437 + LU632_RS22435 0.28 +0.2 4,289,475 + LU632_RS22435 0.35 +3.3 4,289,475 + LU632_RS22435 0.35 -0.1 4,289,476 - LU632_RS22435 0.35 -0.6 4,289,476 - LU632_RS22435 0.35 -0.3 4,289,485 - LU632_RS22435 0.37 -1.0 4,289,554 + LU632_RS22435 0.49 +1.5 4,289,554 + LU632_RS22435 0.49 -0.0 4,289,554 + LU632_RS22435 0.49 -1.5 4,289,554 + LU632_RS22435 0.49 +0.1 4,289,555 - LU632_RS22435 0.49 -2.1 4,289,555 - LU632_RS22435 0.49 +1.3 4,289,555 - LU632_RS22435 0.49 +1.2 4,289,555 - LU632_RS22435 0.49 +0.3 4,289,555 - LU632_RS22435 0.49 -1.2 4,289,705 + LU632_RS22435 0.76 -0.2 4,289,706 - LU632_RS22435 0.76 +0.7 4,289,709 + LU632_RS22435 0.77 +1.8 4,289,755 + LU632_RS22435 0.85 +1.9 4,289,756 - LU632_RS22435 0.85 +0.6 4,289,783 + +2.9 4,289,923 - LU632_RS22440 0.44 -0.7 4,289,945 - LU632_RS22440 0.53 -0.0 4,289,945 - LU632_RS22440 0.53 +0.6 4,289,947 - LU632_RS22440 0.54 +1.2 4,289,961 + LU632_RS22440 0.59 +0.4 4,289,961 + LU632_RS22440 0.59 +1.4 4,290,178 - aroE LU632_RS22445 0.14 +0.4 4,290,263 - aroE LU632_RS22445 0.25 +0.7 4,290,266 + aroE LU632_RS22445 0.25 +2.0 4,290,270 + aroE LU632_RS22445 0.26 -1.3 4,290,437 + aroE LU632_RS22445 0.46 -0.0 4,290,438 - aroE LU632_RS22445 0.46 -1.0 4,290,475 - aroE LU632_RS22445 0.50 -0.0 4,290,620 + aroE LU632_RS22445 0.68 +2.0 4,290,686 + aroE LU632_RS22445 0.76 -0.7 4,290,728 + aroE LU632_RS22445 0.81 +1.0 4,290,822 + -0.6 4,290,822 + +2.0 4,290,823 - +1.4 4,290,823 - -1.0 4,290,823 - +0.7 4,290,825 - +2.0 4,291,755 - LU632_RS22455 0.55 -0.0 4,291,755 - LU632_RS22455 0.55 +1.0 4,291,820 - LU632_RS22455 0.66 +0.7 4,291,880 - LU632_RS22455 0.77 -2.3
Or see this region's nucleotide sequence