Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21015

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,014,538	-				+0.2
4,014,573	-				-1.0
4,014,573	-				+1.5
4,014,615	+				-2.2
4,014,616	-				+0.3
4,014,658	+		LU632_RS21010	0.10	-2.5
4,014,662	+		LU632_RS21010	0.11	-0.4
4,014,678	+		LU632_RS21010	0.13	-0.4
4,014,679	-		LU632_RS21010	0.13	-0.3
4,014,809	-		LU632_RS21010	0.27	-0.9
4,014,921	-		LU632_RS21010	0.40	-0.4
4,014,946	-		LU632_RS21010	0.43	-1.7
4,015,036	+		LU632_RS21010	0.53	+1.2
4,015,080	+		LU632_RS21010	0.57	-1.2
4,015,156	+		LU632_RS21010	0.66	-1.0
4,015,352	-		LU632_RS21010	0.88	+1.0
4,015,417	+				+0.8
4,015,418	-				+1.0
4,015,418	-				+0.7
4,015,471	-				-0.5
4,015,471	-				-2.0